View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_38 (Length: 441)

Name: NF10829A_low_38
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_38
NF10829A_low_38
[»] chr6 (2 HSPs)
chr6 (9-248)||(34691008-34691247)
chr6 (313-435)||(34690822-34690944)
[»] chr2 (11 HSPs)
chr2 (9-248)||(26988933-26989172)
chr2 (313-435)||(26988746-26988868)
chr2 (373-435)||(27076451-27076513)
chr2 (352-435)||(21432814-21432896)
chr2 (373-425)||(27028074-27028126)
chr2 (113-193)||(27028148-27028237)
chr2 (375-433)||(27151628-27151687)
chr2 (373-435)||(27099553-27099615)
chr2 (105-145)||(27076180-27076220)
chr2 (145-197)||(27076251-27076303)
chr2 (14-62)||(27076108-27076156)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 34691247 - 34691008
Alignment:
Q  9 aatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaatcttg 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34691247 aatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaagcttg 34691148  T
Q  109 ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgnnnnnnntaat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  34691147 ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaataat 34691048  T
Q  209 aagatcgaggtctcatgctctatgacagtaagttacaatg 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34691047 aagatcgaggtctcatgctctatgacagtaagttacaatg 34691008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 313 - 435
Target Start/End: Complemental strand, 34690944 - 34690822
Alignment:
Q  313 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattcccttctagaaaatctgtatgggtttttaaatgcatttctt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  34690944 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 34690845  T
Q  413 ctgggctcaaacgatgaagggaa 435  Q
    |||||||||||||||||||||||    
T  34690844 ctgggctcaaacgatgaagggaa 34690822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 26989172 - 26988933
Alignment:
Q  9 aatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaatcttg 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26989172 aatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaagcttg 26989073  T
Q  109 ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgnnnnnnntaat 208  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  26989072 ttgcaaactttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaataat 26988973  T
Q  209 aagatcgaggtctcatgctctatgacagtaagttacaatg 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26988972 aagatcgaggtctcatgctctatgacagtaagttacaatg 26988933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 313 - 435
Target Start/End: Complemental strand, 26988868 - 26988746
Alignment:
Q  313 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattcccttctagaaaatctgtatgggtttttaaatgcatttctt 412  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  26988868 ttctaataaatactaattatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 26988769  T
Q  413 ctgggctcaaacgatgaagggaa 435  Q
    |||||||||||||||||||||||    
T  26988768 ctgggctcaaacgatgaagggaa 26988746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 27076451 - 27076513
Alignment:
Q  373 ccttctagaaaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 435  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27076451 ccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaa 27076513  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 21432896 - 21432814
Alignment:
Q  352 ggtgcatcggttggcatattcccttctagaaaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 435  Q
    ||||||| |||||||| || || ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  21432896 ggtgcattggttggcacatacc-ttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 21432814  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 27028126 - 27028074
Alignment:
Q  373 ccttctagaaaatctgtatgggtttttaaatgcatttcttctgggctcaaacg 425  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  27028126 ccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacg 27028074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 27028237 - 27028148
Alignment:
Q  113 aagctttccaaaagcatttaacagacacaact---------gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaa 193  Q
    ||||||||||||||||||||||| ||| ||||         ||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  27028237 aagctttccaaaagcatttaacaaacataactaagacactagcaaaccaagaaagctgtataatgccagcatttcacgctttcagcaaaa 27028148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 27151687 - 27151628
Alignment:
Q  375 ttctagaaaatctgtatgggtttttaaatgcatttcttct-gggctcaaacgatgaaggg 433  Q
    ||||||| ||||||||| | |||||||||||||||||||| ||||||||| |||||||||    
T  27151687 ttctagagaatctgtatagatttttaaatgcatttcttctggggctcaaatgatgaaggg 27151628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 27099553 - 27099615
Alignment:
Q  373 ccttctagaaaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 435  Q
    ||||||||| ||||||||| |||||| || |||||||||| |||| ||||| |||||||||||    
T  27099553 ccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaa 27099615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 27076180 - 27076220
Alignment:
Q  105 cttgttgtaagctttccaaaagcatttaacagacacaactg 145  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  27076180 cttgttgcaagctttccaaaagcatttaacaaacacaactg 27076220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 27076251 - 27076303
Alignment:
Q  145 gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatg 197  Q
    |||||||||||||||||||||||||| || ||| |  ||||||||||||||||    
T  27076251 gcaaaccaagaaagctgtataatgcctgcgtttcacgctttcagcaaaagatg 27076303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 27076108 - 27076156
Alignment:
Q  14 aatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattc 62  Q
    |||||||| |||||||||||||||||| |||| |||| | |||||||||    
T  27076108 aatgatatatgtcttttagcaaccaaataacatgaacaactgtttattc 27076156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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