View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_384 (Length: 237)
Name: NF10829A_low_384
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_384 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 54793616 - 54793816
Alignment:
| Q |
18 |
atgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgt |
117 |
Q |
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| T |
54793616 |
atgagaaggtttttgtgcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgt |
54793715 |
T |
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| Q |
118 |
gaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaagtagctatgc |
217 |
Q |
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| T |
54793716 |
gaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgtttttgaagtagctatgc |
54793815 |
T |
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| Q |
218 |
t |
218 |
Q |
| |
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| |
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| T |
54793816 |
t |
54793816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 52286300 - 52286496
Alignment:
| Q |
21 |
agaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgtgaa |
120 |
Q |
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|||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52286300 |
agaaagtttttgtgaatgtctgcaagaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgctctttttggcaggagaatgtgaa |
52286399 |
T |
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| Q |
121 |
aaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaagtagctatgc |
217 |
Q |
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| T |
52286400 |
gaattcagcttggcacccttttaaagtcgtcagagagaatgatagccatgtggtatgtaccataaagacatgctctgtgtttttgcagtagttatgc |
52286496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 54775932 - 54775823
Alignment:
| Q |
109 |
ggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaag |
208 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775932 |
ggagcatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgtttttgaag |
54775833 |
T |
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| Q |
209 |
tagctatgct |
218 |
Q |
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|||||||||| |
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| T |
54775832 |
tagctatgct |
54775823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 801466 - 801656
Alignment:
| Q |
21 |
agaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgtgaa |
120 |
Q |
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|||||||||||||| | | |||||||||||||||| |||| || ||||||||||| |||||| | |||||||||||| | |||||||| |||||||| |
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| T |
801466 |
agaaggtttttgtgaatgcctgcaagaaaagattttcttct---gatgaagctgggataaaggccgttgagctttgctctttatggcaggaaaatgtgaa |
801562 |
T |
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| Q |
121 |
aaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaagtagcta |
214 |
Q |
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|| ||||| ||||||||||||||||||||||| |||||||| | | |||||||||| ||||| ||||||||||||||||| ||| |||| |
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| T |
801563 |
gaactcagcttggcacccttttaaagtggtcagtcagaatgataaccccgtggtatgtaccctaaagccatgctctgtgtttttggagtggcta |
801656 |
T |
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