View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_387 (Length: 236)
Name: NF10829A_low_387
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_387 |
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Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7166030 - 7166115
Alignment:
| Q |
1 |
aatatgggtataatattaaggaatgtttcagacttcacaaataacagggataggctatatactcttctgtcaaaaatgagactcaa |
86 |
Q |
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| T |
7166030 |
aatatgggtataatattaagaaatgtttcagacttcacaaacaacagggataggctatatactcttctgtcaaaaatgagactcaa |
7166115 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 7166099 - 7166164
Alignment:
| Q |
99 |
tcaaaaatgagtctcaactgaagtcaatctttgatcgggttattaggctatatacatgttggccta |
164 |
Q |
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| T |
7166099 |
tcaaaaatgagactcaactgaagtcaatctttgatcaggttattaggctatatatatgttggccta |
7166164 |
T |
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