View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_39 (Length: 440)
Name: NF10829A_low_39
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 41965240 - 41964842
Alignment:
| Q |
10 |
ttgtgaactccatacatcatacatgcacatgccgcatgtgacatgcgtataatatatagttaggtaaccttattattttgatctgaacaattcaatagag |
109 |
Q |
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| T |
41965240 |
ttgtgaactccatacatcatacatgcacatgccgcatgtgacatgcgtataatatatagttaggtaaccttattattttgatctgaacaattcaatagag |
41965141 |
T |
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| Q |
110 |
ttcaattagatcaagatttcatcctcttgttctttgcaaaaatgacttactcagatactctatacattccttttggttttgaagagtaataaaatcatca |
209 |
Q |
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| T |
41965140 |
ttca-----------------tcctcttgttctttgcaaaaatgacttactcagatactctatacattccttttggttttgaagagtaataaaatcat-- |
41965060 |
T |
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| Q |
210 |
tgtgtgaaacacttttaggactgtcacattccaataaaattgtatacaaggtcaaataatccatcttattttccttttcaaatggagtcaatcttaagtc |
309 |
Q |
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| T |
41965059 |
-gcgtgaaacacttttaggactgtcacattctaataaaattgtatacaaggtcaaataatccatcttattttccttttcaaatggagtcaatcttaagtc |
41964961 |
T |
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| Q |
310 |
taaccacactaagcaagtgtgttacacattgtttggacgacattctttgcagacccaacaaattaaaaataaaaacccaattgcaaatatttttaatgaa |
409 |
Q |
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| T |
41964960 |
taaccacactaagcaagtgtgttacacattgtttggacgacattctttgcagacccaacaaattaaaaataaaaacccaattgcaaatatttttaatgaa |
41964861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 1226658 - 1226424
Alignment:
| Q |
26 |
tcatacatgcacatgccgcatgtgacatgcgtataatatatagttaggtaaccttattattttgatctgaacaattcaatagagttcaattagatcaaga |
125 |
Q |
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| T |
1226658 |
tcatacatgcacatgccgcatgtgacatgc-tataatatatagttaggtaaccttattattttgatctgaacaattcaatagagttcaattagatcaaga |
1226560 |
T |
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| Q |
126 |
tttcatcctcttgttctttgcaaaaatgacttactcagatactctatacattccttttggttttgaagagtaataaaatcatcatgtgtgaaacactttt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
1226559 |
tttcatcctcttgttctttgcaaaaatgacttactcagatactctatacattccttttggttttgaggagtaataaaa---tcatgtgtgaaacactttt |
1226463 |
T |
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| Q |
226 |
aggactgtcacattccaataaaattgtatacaaggtcaa |
264 |
Q |
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| T |
1226462 |
cggactgtcacattccaataaaattgtatacaaggtcaa |
1226424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 296 - 428
Target Start/End: Complemental strand, 1226428 - 1226296
Alignment:
| Q |
296 |
gtcaatcttaagtctaaccacactaagcaagtgtgttacacattgtttggacgacattctttgcagacccaacaaattaaaaataaaaacccaattgcaa |
395 |
Q |
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| T |
1226428 |
gtcaatcttaagtctaaccacactaagcaagtgtgttacacattgtttggacgacattctttgcagacccaacaaattaaaaataaaaacccaattgcaa |
1226329 |
T |
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| Q |
396 |
atatttttaatgaaaagggtcaaggcctatatt |
428 |
Q |
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| T |
1226328 |
atatttttaatgaaaagggtcaaggcctatatt |
1226296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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