View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_390 (Length: 236)
Name: NF10829A_low_390
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_390 |
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| [»] chr8 (8 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 5351820 - 5351600
Alignment:
| Q |
16 |
acatcatggatacaaagtggaacaattcgtgataacatactctctggaaaattaatggaaaggaacagatatgagaatgcaataaaagcatgtgctttgg |
115 |
Q |
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| T |
5351820 |
acatcatggatacaaagtggaacaattcgtgataacatactctttggaaaattaatggaaaggaacagatatgagaatgcaataaaagcatgtgctttgg |
5351721 |
T |
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| Q |
116 |
acaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaattggctag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
5351720 |
acaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaactagctag |
5351621 |
T |
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| Q |
216 |
agcagtctacaatgatgctga |
236 |
Q |
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||||||||||||||||||||| |
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| T |
5351620 |
agcagtctacaatgatgctga |
5351600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 14949666 - 14949452
Alignment:
| Q |
22 |
tggatacaaagtggaacaattcgtgataacatactctctggaaaattaatggaaaggaacagatatgagaatgcaataaaagcatgtgctttggacaagg |
121 |
Q |
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| T |
14949666 |
tggatacaaagtggaacagttcaagataatatactctttggcaaggcaatggacaaaacaagatatgagaaagcaattaaagcttgtgctttagataagg |
14949567 |
T |
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| Q |
122 |
atatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaattggctagagcagt |
221 |
Q |
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| T |
14949566 |
atatcaatgattttagccatggtgatcttacagaaataggtgagagagggattaacatgagtggaggacaaaagcaaaggattcagcttgctagagcagt |
14949467 |
T |
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| Q |
222 |
ctacaatgatgctga |
236 |
Q |
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||||||||||||||| |
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| T |
14949466 |
ctacaatgatgctga |
14949452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 15125769 - 15125923
Alignment:
| Q |
82 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
181 |
Q |
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||||||||||| ||||| ||||| |||||||| || |||||||| |||| ||||||||| |||||||||||||||||||| ||||||| ||||| ||| |
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| T |
15125769 |
agatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtgagagagggattaacatga |
15125868 |
T |
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| Q |
182 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctga |
236 |
Q |
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||||||| ||||||||||| |||||| | |||||||||||||||||||||||||| |
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| T |
15125869 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctga |
15125923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 5290443 - 5290289
Alignment:
| Q |
82 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
181 |
Q |
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||||||||||| ||||| ||||| ||||| || || |||||||| ||| ||||||||||||||||||||||||||| || |||||||| ||||| ||| |
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| T |
5290443 |
agatatgagaaagcaatcaaagcttgtgccttagataaggatatcaatgattttagccatggtgatcttacagaaatcggtcagagagggattaacatga |
5290344 |
T |
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| Q |
182 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctga |
236 |
Q |
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||||||| ||||||||||| |||||| | |||||||||||||||||||||||||| |
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| T |
5290343 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctga |
5290289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 5313688 - 5313902
Alignment:
| Q |
22 |
tggatacaaagtggaacaattcgtgataacatactctctggaaaattaatgga-aaggaacagatatgagaatgcaataaaagcatgtgctttggacaag |
120 |
Q |
| |
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|||||||||||||||||| |||| ||||| ||||||| ||| || |||||| || ||| | |||||||||||| || |||| |||||| || || ||| |
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| T |
5313688 |
tggatacaaagtggaacagttcgagataatatactctttggcaagccaatggacaaagaaaa-atatgagaatgccattaaagtatgtgccttagataag |
5313786 |
T |
|
| Q |
121 |
gatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaattggctagagcag |
220 |
Q |
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||||| |||| ||||||| |||| ||||||||||||||||| |||||||| ||||| | |||||||| || |||||||| |||||| | |||||||||| |
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| T |
5313787 |
gatattgatgattttagctatggcgatcttacagaaataggtcagagagggattaacgtaagtggaggacagaagcaaaggattcaaatagctagagcag |
5313886 |
T |
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| Q |
221 |
tctacaatgatgctga |
236 |
Q |
| |
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|||||||||||||||| |
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| T |
5313887 |
tctacaatgatgctga |
5313902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 5282856 - 5282702
Alignment:
| Q |
82 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
181 |
Q |
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||||||||||| ||||| ||||| ||||| || || |||||||| ||| ||| |||||||||||||||||||||||||| |||||||| | || | | |
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| T |
5282856 |
agatatgagaaagcaattaaagcttgtgccttagataaggatatcaatgatttcagccatggtgatcttacagaaataggtcagagagggatcaatataa |
5282757 |
T |
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| Q |
182 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctga |
236 |
Q |
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||||||| ||||||||||| |||||| | |||||||||||||||||||||||||| |
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| T |
5282756 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctga |
5282702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 11833226 - 11833377
Alignment:
| Q |
82 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
181 |
Q |
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||||||||||| ||||| ||||| ||| | || | |||||||| ||| ||||||||||||||||||||||||||| || |||||||| | || | | |
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| T |
11833226 |
agatatgagaaagcaattaaagcttgttccttacataaggatatcaatgattttagccatggtgatcttacagaaattggtcagagagggatcaatataa |
11833325 |
T |
|
| Q |
182 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgc |
233 |
Q |
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||||||| ||||||||||| |||||| | |||||||||||||| |||||||| |
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| T |
11833326 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctataatgatgc |
11833377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 5306552 - 5306691
Alignment:
| Q |
94 |
gcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaa |
193 |
Q |
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||||| ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||||||| || |||||||| | || |||||||||| |||| |
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| T |
5306552 |
gcaattaaagcttgtgctttagataaggacttcaatgatttcagccatggtgatcttacagaaattggccagagagggatcaatatgagtggaggacaaa |
5306651 |
T |
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| Q |
194 |
agcaaagaattcaattggctagagcagtctacaatgatgc |
233 |
Q |
| |
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|||| || |||||| | |||||||||||||||| |||||| |
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| T |
5306652 |
agcagaggattcaactagctagagcagtctacagtgatgc |
5306691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 31526566 - 31526412
Alignment:
| Q |
82 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
181 |
Q |
| |
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|||||||||||||| || ||||| ||||| |||||| | ||||| ||| ||| || ||||||||||||||||||||||| || ||||| ||||| | | |
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| T |
31526566 |
agatatgagaatgctattaaagcttgtgccttggacgaagatatcaatgatttgagtcatggtgatcttacagaaataggtcaaagagggattaacctaa |
31526467 |
T |
|
| Q |
182 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctga |
236 |
Q |
| |
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||||||| ||||||||||| |||||| | ||| ||||||| ||||| |||||||| |
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|
| T |
31526466 |
gtggaggacaaaagcaaaggattcaactagctcgagcagtttacaacgatgctga |
31526412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 11739020 - 11738952
Alignment:
| Q |
139 |
catggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaa |
207 |
Q |
| |
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||||||||||| || ||||| ||| |||||||| ||||||||||||| || ||||||||| |||||||| |
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|
| T |
11739020 |
catggtgatctcactgaaattggagagagaggagttaacttgagtgggggtcaaaagcaacgaattcaa |
11738952 |
T |
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