View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_396 (Length: 234)

Name: NF10829A_low_396
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_396
NF10829A_low_396
[»] chr8 (12 HSPs)
chr8 (17-215)||(17722420-17722608)
chr8 (17-203)||(35948827-35949013)
chr8 (17-203)||(7956340-7956516)
chr8 (17-203)||(44223327-44223503)
chr8 (66-203)||(9505015-9505153)
chr8 (45-150)||(3767684-3767789)
chr8 (45-203)||(16570890-16571047)
chr8 (66-203)||(32321799-32321936)
chr8 (45-195)||(34760834-34760975)
chr8 (28-102)||(9040513-9040587)
chr8 (151-203)||(9040427-9040479)
chr8 (118-154)||(8266063-8266099)
[»] chr1 (12 HSPs)
chr1 (17-203)||(16584864-16585050)
chr1 (17-149)||(25785805-25785937)
chr1 (17-195)||(8083994-8084173)
chr1 (17-179)||(1161433-1161594)
chr1 (17-148)||(11619973-11620104)
chr1 (17-201)||(18461120-18461295)
chr1 (45-203)||(42009997-42010155)
chr1 (45-195)||(512961-513111)
chr1 (111-204)||(32678514-32678607)
chr1 (113-195)||(8414674-8414756)
chr1 (20-158)||(11911629-11911768)
chr1 (113-180)||(27320560-27320627)
[»] chr4 (7 HSPs)
chr4 (24-203)||(23107918-23108097)
chr4 (17-200)||(4413456-4413640)
chr4 (17-204)||(24466315-24466502)
chr4 (17-181)||(28319290-28319454)
chr4 (66-195)||(53393204-53393333)
chr4 (66-200)||(8606181-8606315)
chr4 (114-203)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (27-204)||(16746550-16746727)
chr5 (31-203)||(31895896-31896068)
chr5 (17-200)||(19947711-19947894)
chr5 (17-144)||(16746421-16746548)
chr5 (66-181)||(1498243-1498358)
chr5 (52-195)||(29126091-29126234)
chr5 (155-193)||(41092125-41092163)
chr5 (112-172)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (17-204)||(580-767)
[»] chr7 (13 HSPs)
chr7 (17-203)||(7352370-7352555)
chr7 (17-204)||(39695086-39695268)
chr7 (17-142)||(46993309-46993434)
chr7 (20-150)||(7994998-7995128)
chr7 (17-148)||(11727328-11727449)
chr7 (45-203)||(48070614-48070772)
chr7 (66-203)||(3996991-3997128)
chr7 (67-171)||(46265353-46265457)
chr7 (31-171)||(2922986-2923125)
chr7 (112-195)||(12013026-12013109)
chr7 (52-203)||(27226938-27227089)
chr7 (139-195)||(12471855-12471911)
chr7 (139-191)||(35738239-35738291)
[»] chr3 (12 HSPs)
chr3 (17-203)||(46655514-46655701)
chr3 (52-200)||(44471020-44471168)
chr3 (28-204)||(11503337-11503513)
chr3 (52-204)||(30554574-30554726)
chr3 (106-195)||(46892612-46892701)
chr3 (66-167)||(27524053-27524154)
chr3 (52-148)||(779533-779629)
chr3 (107-195)||(23307117-23307205)
chr3 (138-201)||(12937849-12937912)
chr3 (45-203)||(26757593-26757751)
chr3 (72-158)||(44285605-44285691)
chr3 (103-203)||(23659401-23659501)
[»] chr2 (11 HSPs)
chr2 (24-203)||(31111413-31111592)
chr2 (17-150)||(4638207-4638340)
chr2 (24-201)||(13852276-13852453)
chr2 (45-203)||(29109190-29109348)
chr2 (19-191)||(3919857-3920029)
chr2 (17-84)||(36009278-36009345)
chr2 (84-203)||(12893980-12894099)
chr2 (72-158)||(37630375-37630461)
chr2 (28-150)||(38607020-38607141)
chr2 (66-195)||(5526225-5526353)
chr2 (117-204)||(30906942-30907029)
[»] scaffold0565 (1 HSPs)
scaffold0565 (17-143)||(1844-1970)
[»] chr6 (7 HSPs)
chr6 (67-200)||(7176529-7176662)
chr6 (66-173)||(23301441-23301548)
chr6 (113-203)||(11971456-11971546)
chr6 (45-173)||(23300455-23300583)
chr6 (46-148)||(7551423-7551525)
chr6 (72-193)||(9826747-9826868)
chr6 (66-143)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (113-203)||(33729-33819)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 17722420 - 17722608
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17722420 atcatcggattggttcatcggtttcacagatctcgaaatgaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 17722519  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctatctctcgttgat 215  Q
    ||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  17722520 gaaccaaacaaggttggatatttt----------tccggtttggactttcggtttcattggttttatccgaaccatttacacccctatctctcgttgat 17722608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 35949013 - 35948827
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||| ||| || |  ||||||| |||||||||||    
T  35949013 atcatcggattggttcatcggtttcatggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaacc 35948914  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    ||||||||||| || ||||||||||| | ||||||||  |||||||||||| |||| |||||||| | |||| |||||| |||||||    
T  35948913 gaaccaaacaaagtcggatatttttttgttttggttcaatttggactttcgttttcgttggttttgtccgaaacacttacaccccta 35948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 7956340 - 7956516
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  7956340 atcatcggattggttcatcggtttcacatatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaacc 7956439  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
     ||| || |||||| | |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  7956440 aaacaaagcaaggtcgaatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 7956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 44223327 - 44223503
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||| ||||| ||||     
T  44223327 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggttttaaact 44223426  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||||||| |   |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  44223427 gaaccaaacaagatcatatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 44223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 9505153 - 9505015
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatatttttt-cggtttggttcggtttggactt 164  Q
    ||||| |||||||||| |||||||| | || |||||| | | |||  || ||||||||||||||||||||||||||| || ||||||| |||||||| ||    
T  9505153 gaaccgaaccaaactatatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattt 9505054  T
Q  165 tcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||||| |||||||| | ||||||||| |||||||    
T  9505053 tcggtttcatcggttttatccaaaccacttacaccccta 9505015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 3767684 - 3767789
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||| |||| |||||| | |||||  |||||||| ||||||||| ||||| |||||||    
T  3767684 gatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcg 3767783  T
Q  145 gtttgg 150  Q
    ||||||    
T  3767784 gtttgg 3767789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 16570890 - 16571047
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||| |||||||  ||||| ||||||| ||||||||||| | || ||| || | |||||  |||| ||||||||||||||||||||||||| |    
T  16570890 gatctcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggatatttttt-g 16570988  T
Q  145 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    ||||||||||||||| | ||| | |||||| |||||| | | ||||| ||| |||||||    
T  16570989 gtttggttcggtttgaatttttgatttcatcggttttgtccaaaccaattacaccccta 16571047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 32321936 - 32321799
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 165  Q
    ||||| ||||||| |||||||||||   ||  ||||| ||| ||| ||||||||||||||||||| | ||| |||||||||||| || ||||| |  |||    
T  32321936 gaaccgaaccaaattagatcggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcgaatactttttcggtttgatttggtttaggtttt 32321837  T
Q  166 cggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||||  ||||||| ||||||||||  |||||||    
T  32321836 cggtttcatcagttttatccgaaccacttgcaccccta 32321799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 195
Target Start/End: Original strand, 34760834 - 34760975
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||| ||||| || ||||||||||||||||||||||||| | || |||||| | | |||  |||||||||||||||| |  |||| |||||      
T  34760834 gatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatacttttt-- 34760931  T
Q  145 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
           |||||||||| |||||||||||| |||||| |||||||| ||||    
T  34760932 -------tcggtttggattttcggtttcatcggttttgttcgaaccgctta 34760975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 9040587 - 9040513
Alignment:
Q  28 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcgg 102  Q
    ||||||||||||||  ||||||| |||| ||||| |  |||||||||||||| |||||||||| |||| ||||||    
T  9040587 ggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcgg 9040513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 9040479 - 9040427
Alignment:
Q  151 ttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||| |||||||    
T  9040479 ttcggtttggactttcgatttcatcggttttatccgaaccgcttataccccta 9040427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 8266099 - 8266063
Alignment:
Q  118 aaccaaacaaggttggatattttttcggtttggttcg 154  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  8266099 aaccaaataaggttggatactttttcggtttggttcg 8266063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 16584864 - 16585050
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16584864 atcatcagattggttcatcggtttcacggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaacc 16584963  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  16584964 gaaccaaacaaggttggatattttttcgttttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 16585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 25785937 - 25785805
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  25785937 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaacc 25785838  T
Q  117 gaaccaaacaaggttggatattttttcggtttg 149  Q
    |||||||||||||| ||||||||||||||||||    
T  25785837 gaaccaaacaaggtcggatattttttcggtttg 25785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 8084173 - 8083994
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||||||||| |||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8084173 atcatcggattgattcatcagtttcacggatcttgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcggattggtttcaaacc 8084074  T
Q  117 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
     ||||||||||||| ||||||| ||||||||||| ||  ||||||||||||| |||| |||||| | | |||||||||||    
T  8084073 aaaccaaacaaggtcggatatttttttcggtttgatttagtttggactttcgatttcgttggttatgtccgaaccactta 8083994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 1161433 - 1161594
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||    
T  1161433 atcatcggattggttcatcggtttcacggatatcgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggcttggattggtttcaaacc 1161532  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtt 179  Q
    |||||||| ||||| ||||| |||||||||||||||||||||  ||||| | |||| ||||||    
T  1161533 gaaccaaataaggtcggata-tttttcggtttggttcggtttaaacttttgatttcgttggtt 1161594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 11620104 - 11619973
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||     
T  11620104 atcatcggattggttcatcggtttcacagatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattagtttggatcggtttcaaact 11620005  T
Q  117 gaaccaaacaaggttggatattttttcggttt 148  Q
    |||||||||||| | ||||||||||| |||||    
T  11620004 gaaccaaacaagatcggatatttttttggttt 11619973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 18461295 - 18461120
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| || | ||| | ||| |||||    
T  18461295 atcatcggattggttcatcggtttcacggatctcgaaataaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaacc 18461196  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 201  Q
    |||| ||||||||| |||||         ||||||| |||||||||||| |||||| |||||||| || |||||||||| |||||    
T  18461195 gaactaaacaaggtcggata---------tttggtttggtttggacttttggtttcgttggttttgtttgaaccacttacacccc 18461120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 42009997 - 42010155
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||| ||||| |||||  ||||| |||||||||||||||| ||| ||| |||| |||||||||||||||||||||| || |||||||||||||    
T  42009997 gatctcaaaatgaaaaaccatgagtcaaactaaactagatcggtttcaattggtttggatcggtttcaaaccgaaccaaacaatgtcggatattttttcg 42010096  T
Q  145 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    ||||||| | ||||||||| |||||||| ||||||| || |||||| |||| |||||||    
T  42010097 gtttggtccagtttggactatcggtttcgttggtttaatccgaaccgcttacaccccta 42010155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 195
Target Start/End: Complemental strand, 513111 - 512961
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||| |||||| | ||| | || |||||||||||||||| | || |||||| |||||||  |||||||||||||||| ||||||| |||||||    
T  513111 gatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaagattggatactttttcg 513012  T
Q  145 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
    |||||||||| |||||  ||| | ||||||  ||||| | |||||||||||    
T  513011 gtttggttcgatttgggtttttgatttcatcagttttgtccgaaccactta 512961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 32678514 - 32678607
Alignment:
Q  111 caaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 204  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||| | ||||| |||||| |||||| ||||||||||||| ||| ||||    
T  32678514 caaaccaaaccaaacaaggtcggatattttttcggcttagttcggtttgaattttcgatttcatcggttttgttcgaaccacttacacctctat 32678607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 8414674 - 8414756
Alignment:
Q  113 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||| |||| ||||||| |||||| | |||||||||||    
T  8414674 aaccaaaccaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccactta 8414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 11911768 - 11911629
Alignment:
Q  20 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 119  Q
    ||||| ||||||||||||||   | ||| || |||| ||||| || |||| ||| |||||||||||||||| | || |||||| | |||||  |||||||    
T  11911768 atcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaa 11911669  T
Q  120 ccaaacaaggttggata-ttttttcggtttggttcggttt 158  Q
    ||||||||||| ||||| ||||||||  |||||| |||||    
T  11911668 ccaaacaaggtcggatacttttttcgaattggtttggttt 11911629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 27320560 - 27320627
Alignment:
Q  113 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttt 180  Q
    |||||||||||||||||| ||||| ||||| | |||| ||| |||| || |||||||||||| |||||    
T  27320560 aaccgaaccaaacaaggtcggatacttttttgatttgattcagtttagattttcggtttcatcggttt 27320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 23107918 - 23108097
Alignment:
Q  24 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 123  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  23107918 gattggttcatcggtttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaa 23108017  T
Q  124 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  23108018 acaaggtcggatatttttcctgtttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 23108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 4413640 - 4413456
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||    
T  4413640 atcatcggattggtttatcggtttcacggatctcgaaatgaaaaaccatgaaccaaagcaaactagatcggtttcgattggttcggatcggttttaaacc 4413541  T
Q  117 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 200  Q
    |||||||||||| | ||||||| |||||||| | |||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||    
T  4413540 gaaccaaacaagatcggatatttttttcggtctagttcagtttgaacttttggtttcgttggttttatccgaaccacttacaccc 4413456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 24466315 - 24466502
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  24466315 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 24466414  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 204  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  24466415 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 24466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 28319290 - 28319454
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||| ||||| |||||| | |||||  |||||||||| ||||| |||||||||||||||| || |||| ||| |||| |||||||  |||||||||||    
T  28319290 atcatcagattgattcatcaggttcacgaatctcgaaatgaaaaaccatgaaccaaaccaaattaaatcgattttgattggttcggaacggtttcaaacc 28319389  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtttt 181  Q
    ||||||||||| ||  |||||||||||||||||||||| ||| |||||||| |||| ||||||||    
T  28319390 gaaccaaacaatgtcagatattttttcggtttggttcgatttagactttcgatttcgttggtttt 28319454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 53393204 - 53393333
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 165  Q
    ||||| ||||||||||||||||||| | || |||||| |  |||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||    
T  53393204 gaaccgaaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggatttt 53393303  T
Q  166 cggtttcattggttttattcgaaccactta 195  Q
    ||||||||| |||||| | |||||||||||    
T  53393304 cggtttcatcggttttgtccgaaccactta 53393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 8606181 - 8606315
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 165  Q
    ||||| |||||| | |||||||||| |||| |||||  |||||||  |||||| |||||||| |||||||| |||||||||||||||   ||| |||| |    
T  8606181 gaaccgaaccaaccaagatcggtttagattggttcgatttggttttgaaccgagccaaacaaagttggatactttttcggtttggtttaattttgactat 8606280  T
Q  166 cggtttcattggttttattcgaaccacttaaaccc 200  Q
    | ||||| | |||||| | ||||||||||| ||||    
T  8606281 cagtttcgtcggttttgtccgaaccacttacaccc 8606315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 39839064 - 39839153
Alignment:
Q  114 accgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||||||||||||   ||| |||||| ||||| || |||||||| |||||||||||| |||||  | ||||||||||| |||||||    
T  39839064 accgaaccaaacaaggtcaaatactttttcagtttgatttggtttggattttcggtttcatcggtttcgtccgaaccacttacaccccta 39839153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 16746550 - 16746727
Alignment:
Q  27 tggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaaca 126  Q
    |||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  16746550 tggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaaca 16746649  T
Q  127 aggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 204  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| | ||||||||||| | ||||||    
T  16746650 aggttggatattttttcgatttggttcggtttagactttcggtttcgttggttttgtccgaaccacttacatccctat 16746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 31896068 - 31895896
Alignment:
Q  31 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 130  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||    
T  31896068 tcatcggtttcacggatcacgaaataaaaaatcatgaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggt 31895969  T
Q  131 tggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
     |||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |||||||    
T  31895968 cggatattttttcggtttggttcagtttggactttcgattttgttggttttgtccgaaccacttacaccccta 31895896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 19947894 - 19947711
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| |||| |||||| | ||||||| ||| |||| ||||||||||     
T  19947894 atcatcggattggttcatcggtttcacggatcttgaaatgaaaaaccatgaaccaaatcaaagtagatcagattcgattggtttggatcggtttcaaact 19947795  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 200  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||| |||| | ||||||||||| ||||    
T  19947794 gaaccaaacaatgtcggatattttttcggtttggttcggtttggactttcggattcgttgattttgtccgaaccacttacaccc 19947711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 16746421 - 16746548
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||    
T  16746421 atcatcggattggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaacc 16746520  T
Q  117 gaaccaaacaaggttggatattttttcg 144  Q
    ||||||||||||||||||||||||||||    
T  16746521 gaaccaaacaaggttggatattttttcg 16746548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 1498243 - 1498358
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 165  Q
    |||||||||  ||||| |||||||| | || |||| | | |||||  |||||||||||||||||| ||||||||| || ||||| ||||||||||| |||    
T  1498243 gaaccaaacttaactacatcggtttaggttggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggatttt 1498342  T
Q  166 cggtttcattggtttt 181  Q
    ||||||||| ||||||    
T  1498343 cggtttcatcggtttt 1498358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 195
Target Start/End: Complemental strand, 29126234 - 29126091
Alignment:
Q  52 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 151  Q
    |||||||||||   ||||||||| |||||||| |||||| | || |||  | | |||||||||| || ||||||||  | ||||| ||||||||||||||    
T  29126234 aaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaactgacccaaacaaaatcggatactttttcggtttggt 29126135  T
Q  152 tcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
    |||||||  | | ||  |||| |||||||| | |||||||||||    
T  29126134 tcggtttaaattctccatttcgttggttttgtccgaaccactta 29126091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 41092125 - 41092163
Alignment:
Q  155 gtttggactttcggtttcattggttttattcgaaccact 193  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41092125 gttttgactttcggtttcattggttttgttcgaaccact 41092163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 30126223 - 30126283
Alignment:
Q  112 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttc 172  Q
    |||| |||||||||||||| | |||||||||  ||||| ||||||||||| ||||| ||||    
T  30126223 aaacagaaccaaacaaggtcgaatattttttttgtttgattcggtttggagtttcgatttc 30126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 580 - 767
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  580 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 679  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 204  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  680 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 7352370 - 7352555
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  7352370 atcatcggattgatt-atcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaacc 7352468  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
     ||||||| || || |||||||||||||||| |||| | ||||||||||||||||| |||||||| |  |||||| ||| |||||||    
T  7352469 aaaccaaataaagtcggatattttttcggttcggtttgatttggactttcggtttcgttggttttgtctgaaccaattacaccccta 7352555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 39695268 - 39695086
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||    
T  39695268 atcatcagattggttcatcggtttcacggacctcgaaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaacc 39695169  T
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 204  Q
    |||||||||||||| |||||| | ||||||||     || |||||||||||||||| ||||||||   ||||||||||| ||||||||    
T  39695168 gaaccaaacaaggtcggatatctcttcggttt-----gggttggactttcggtttcgttggttttgcccgaaccacttacacccctat 39695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 46993434 - 46993309
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||  |||||||   |||||||||    
T  46993434 atcatcggattggttaatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcggatcaatttcaaacc 46993335  T
Q  117 gaaccaaacaaggttggatatttttt 142  Q
    || ||||||||||| | |||||||||    
T  46993334 gacccaaacaaggtcgaatatttttt 46993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 7995128 - 7994998
Alignment:
Q  20 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 119  Q
    ||||||||||||||||||||||||  ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||||||| | |||  |||||||    
T  7995128 atcggattggttcatcggtttcacgaatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaa 7995029  T
Q  120 ccaaacaaggttggatattttttcggtttgg 150  Q
    |||||||||||   |||||||||| ||||||    
T  7995028 ccaaacaaggtcaaatattttttcagtttgg 7994998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 11727328 - 11727449
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||| |||||||| || ||||||||||| ||||| || |||||||||||||||||||||||||           |||||||||||||||    
T  11727328 atcatcggattggtttatcggttttacggatctcgaaatgaaaaaccacgaaccaaaccaaactagatcggttt----------tgattggtttcaaacc 11727417  T
Q  117 gaaccaaacaaggttggatattttttcggttt 148  Q
    ||||||||||||||   |||||||||||||||    
T  11727418 gaaccaaacaaggtcatatattttttcggttt 11727449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 48070772 - 48070614
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||| ||||| |  ||||| || |||||||||||||||| | ||||||||| | |||||  |||| || |||||||||| ||||||||||| |    
T  48070772 gatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggttttgaaccaaatcaaacaaggtcggatatttttttg 48070673  T
Q  145 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||| ||||||||| || ||||||||| || | |||| | ||||||||||| |||||||    
T  48070672 gtttagttcggtttagattttcggtttgatcgattttgtccgaaccacttacaccccta 48070614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 203
Target Start/End: Original strand, 3996991 - 3997128
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 165  Q
    ||||| |||||||| || | ||||| |||| ||| || | |||||  |||| |||||||||| || ||||  || ||||||||||| |||||||||||||    
T  3996991 gaaccgaaccaaacaaggttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggattcttcttcggtttggtacggtttggacttt 3997090  T
Q  166 cggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||||||||||| | ||||||||||| |||||||    
T  3997091 cggtttcattggttttgtccgaaccacttacaccccta 3997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 46265353 - 46265457
Alignment:
Q  67 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 166  Q
    ||||||||||||| |||||||||| ||||  ||||| | |||||  |||||||||  ||||||| |||||  |||| |||||||||||||||||||||||    
T  46265353 aaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacatttttggtttggttcggtttggactttc 46265452  T
Q  167 ggttt 171  Q
    |||||    
T  46265453 ggttt 46265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 2923125 - 2922986
Alignment:
Q  31 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 130  Q
    |||||||||||   |||||| |||| |||||||| ||||| || ||||| || ||||| | |||| |||||| | |||||  |||||||||| |||||||    
T  2923125 tcatcggtttcttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggt 2923026  T
Q  131 tggatattttttcggtttggttcggtttggactttcggttt 171  Q
    || |||  |||| |||||||||| |||||||||||||||||    
T  2923025 tgaatacatttttggtttggttc-gtttggactttcggttt 2922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 12013026 - 12013109
Alignment:
Q  112 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||  |||  | ||||| |||||| |||||||||| |||||||||    
T  12013026 aaaccgaaccaaataaggtcggatactttttcggttcggttcaatttaaattttcgatttcatcggttttattcaaaccactta 12013109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 27226938 - 27227089
Alignment:
Q  52 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 151  Q
    |||| ||||| || ||||| |||||||| || ||||||| |||| |||||| | || ||  | || ||||| ||||| | |||||  ||||  ||||| |    
T  27226938 aaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttcggctttgatccaaaccagacaagatgggataccttttaagtttgtt 27227037  T
Q  152 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||||||||| | |||||| |||||| | ||||| ||||| |||||||    
T  27227038 tcggtttggacttttgatttcatcggttttgtccgaacaacttacaccccta 27227089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 12471855 - 12471911
Alignment:
Q  139 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
    ||||| |||| |||||||||||| ||||  |||||| |||||||| |||||||||||    
T  12471855 ttttcagttttgttcggtttggattttcaatttcatcggttttatccgaaccactta 12471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 35738239 - 35738291
Alignment:
Q  139 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 191  Q
    ||||||||| |||||||||||||||||| ||||| | | |||||| |||||||    
T  35738239 ttttcggttcggttcggtttggactttccgtttcgtcgattttatccgaacca 35738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 46655701 - 46655514
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||| |||||||||||    
T  46655701 atcattggattggttcatcggtttcacggatctcgaaatgaaaaagcatgaaccaaaccaaactagattggttttgattggttcggatcggtttcaaacc 46655602  T
Q  117 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||  ||||| ||||||| |||| ||||||||| |||| ||| ||||| |||| |||| ||||| ||||||||||  |||||||    
T  46655601 gaaccaagtaaggtcggatattttttttggtttggtttggttcggattttcgatttcgttggatttatccgaaccacttgcaccccta 46655514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 44471168 - 44471020
Alignment:
Q  52 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 151  Q
    |||| ||||| || ||||| ||||||||||||||||||| |||| ||| || | |||||  |||||||| ||||||||| |||||  |||||||||||||    
T  44471168 aaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggt 44471069  T
Q  152 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 200  Q
    |||||||||| ||||| |||||| |||||| | ||||||||||| ||||    
T  44471068 tcggtttggattttcgatttcatcggttttgtccgaaccacttacaccc 44471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 11503337 - 11503513
Alignment:
Q  28 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 127  Q
    |||| |||||||||   |||||| |||| |||||||  |||||||||||||  ||||||||||||||| |||||| | |||||  ||||  |||| ||||    
T  11503337 ggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaa 11503436  T
Q  128 ggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 204  Q
    ||| |||||  |||| ||||||||||||||||||||||| ||||||| ||||||||   |||| |||| ||||||||    
T  11503437 ggtcggatacatttttggtttggttcggtttggactttcagtttcatcggttttatcttaaccgcttacacccctat 11503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 30554574 - 30554726
Alignment:
Q  52 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 151  Q
    |||| |||||||  ||||| ||||||||||||||||||| |||| |||||| | | |||  |||||||| ||||||||| ||||| ||||||||||| |     
T  30554574 aaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggatactttttcggtttagc 30554673  T
Q  152 tcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 204  Q
    ||| |||||| |||||||||||| | |||| ||||||||| ||| ||||||||    
T  30554674 tcgatttggattttcggtttcatcgattttgttcgaaccatttacacccctat 30554726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 46892701 - 46892612
Alignment:
Q  106 ggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||  ||||||| ||||||   |||||||||||    
T  46892701 ggttttaaaccgaaccaaacaaggtcggatattttttcggtttggttcggtttgaattttttgtttcatcggttttgcccgaaccactta 46892612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 27524154 - 27524053
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 165  Q
    ||||| |||||||| || ||| ||| |||| ||| || |||||||  | |||||||||||||||| | |||  ||||||||||||||  |||||||||||    
T  27524154 gaaccgaaccaaacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttttcggtttggtttagtttggacttt 27524055  T
Q  166 cg 167  Q
    ||    
T  27524054 cg 27524053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 779533 - 779629
Alignment:
Q  52 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggttt 148  Q
    |||| ||||| || ||||| ||||||||||||| ||||| | || |||||  |  ||||  |||||||| ||||||||||||||| |||||||||||    
T  779533 aaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 23307117 - 23307205
Alignment:
Q  107 gtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 195  Q
    |||| |||||||||||  |||||||| ||| | |||| |||||||| ||||| |||||||  |||||| | |||| |||||||||||||    
T  23307117 gttttaaaccgaaccattcaaggttgaatactatttcagtttggtttggtttagactttcaatttcatcgattttgttcgaaccactta 23307205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 12937849 - 12937912
Alignment:
Q  138 tttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 201  Q
    ||||||| ||| |||||||||||| |||||||||||| | |||||| |||| |||||| |||||    
T  12937849 tttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttacacccc 12937912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 26757751 - 26757593
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||| ||||  || ||||| |||||| ||| |||| ||| | || |||||| |  |||| ||||  |||||||||| || | ||| |||||||    
T  26757751 gatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatactttttcg 26757652  T
Q  145 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
     ||| ||| | |||||| ||||| ||||||||||||| | | ||||||||| |||||||    
T  26757651 attttgtttgatttggattttcgatttcattggttttgtccaaaccacttacaccccta 26757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 44285691 - 44285605
Alignment:
Q  72 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 158  Q
    |||||||||| |||| ||| | || |||||| | |||||  ||||||||||||||||||   |||||||||||||||  ||||||||    
T  44285691 aaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaaccaaacaaggtcatatattttttcggtttaattcggttt 44285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 23659501 - 23659401
Alignment:
Q  103 attggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccct 202  Q
    ||||||||  |||||||||||||||  || |||| ||||||| ||| |  ||||||| | |||||||||||| | |||| |  |||||||||| ||||||    
T  23659501 attggttttgaaccgaaccaaacaaaattagatactttttcgatttagaacggtttgaattttcggtttcatcgattttgtctgaaccacttatacccct 23659402  T
Q  203 a 203  Q
    |    
T  23659401 a 23659401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 31111592 - 31111413
Alignment:
Q  24 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 123  Q
    |||||||| ||||||||||  |||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||| |||  |||||||||||||||||    
T  31111592 gattggtttatcggtttcaaggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaa 31111493  T
Q  124 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    ||||||| ||||||||||||||||||||||  |||||| |||||||||| ||| |||| |   ||||||||| |||||||    
T  31111492 acaaggtcggatattttttcggtttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacaccccta 31111413  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 4638340 - 4638207
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||| ||| || | |||| |||||||| | |||||||||    
T  4638340 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaacc 4638241  T
Q  117 gaaccaaacaaggttggatattttttcggtttgg 150  Q
    ||||| |||||||| |||||||||||||||||||    
T  4638240 gaaccgaacaaggtcggatattttttcggtttgg 4638207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 13852276 - 13852453
Alignment:
Q  24 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 123  Q
    |||||||||||||||||||| |||||| |||| |||||  ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||| |||    
T  13852276 gattggttcatcggtttcacggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaa 13852375  T
Q  124 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 201  Q
    |||| ||  |||||||||| | |||| |||  |||||||||||| |||| |||||||| | ||||| ||||| |||||    
T  13852376 acaaagtcagatatttttttgatttgattcaatttggactttcgatttcgttggttttgtccgaactacttacacccc 13852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 29109190 - 29109348
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||| ||||| |  ||||||||||||||||||| ||||| | ||  ||||| | |||||  ||| |||||||||||||| ||||| ||||||     
T  29109190 gatctcaaaattaaaaaccgagaaccaaaccaaactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttca 29109289  T
Q  145 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    ||||||||||||||||| |||| |||||||  ||||| | ||||||||||| |||||||    
T  29109290 gtttggttcggtttggattttcagtttcatcagttttgtccgaaccacttacaccccta 29109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 3919857 - 3920029
Alignment:
Q  19 catcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccga 118  Q
    |||||| | ||||||||||||    ||||||| |||| |||||| | ||||||||||||||||||||||||| | || |||||| | |||||  |||| |    
T  3919857 catcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcggttttgaaccaa 3919956  T
Q  119 accaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 191  Q
    ||||||||| || | ||  |||||||||||| ||| ||||| | ||| ||||||||||||||| ||| |||||    
T  3919957 accaaacaaagtcgaatgctttttcggtttgattcagtttgaattttaggtttcattggttttgttccaacca 3920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 36009345 - 36009278
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagat 84  Q
    |||||||||||| |||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||    
T  36009345 atcatcggattgattcatcggtttcatggatctcgaaatgaaaaaccatgaaccaaaccaaactagat 36009278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 12893980 - 12894099
Alignment:
Q  84 tcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttat 183  Q
    ||||||| |||| |||||| || ||||  |||||||||||||||||| |||||  |||| |||||||||| ||||||||||| | |||| |||||||| |    
T  12893980 tcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttggttcagtttggacttttgatttcgttggttttgt 12894079  T
Q  184 tcgaaccacttaaaccccta 203  Q
      |||||||| | |||||||    
T  12894080 ctgaaccactcacaccccta 12894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 37630461 - 37630375
Alignment:
Q  72 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 158  Q
    |||||||||||||| |||| | || ||| |||| | |||  |||| |||||| ||||||| |||| |||||||||||||||||||||    
T  37630461 aaccaaactagatcagtttaggttggtttggatcgattttgaaccaaaccaagcaaggttcgatactttttcggtttggttcggttt 37630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 38607141 - 38607020
Alignment:
Q  28 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 127  Q
    ||||||||||||| |  |||||| |||| ||||| || ||||| |||||||| || || |||| |||| |||||| | |||||  || |||| |||||||    
T  38607141 ggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcgaa-caaacaa 38607043  T
Q  128 ggttggatattttttcggtttgg 150  Q
    ||| |||||| ||||||||||||    
T  38607042 ggtcggatatattttcggtttgg 38607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 5526353 - 5526225
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 165  Q
    ||||| ||||||||||||||||||| | || |||||  |  ||||  |||||||| ||||||||| |||||  ||||||||||||||   |||||| |||    
T  5526353 gaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggatttt 5526255  T
Q  166 cggtttcattggttttattcgaaccactta 195  Q
    || |||| |||||||| | || ||||||||    
T  5526254 cgatttctttggttttgtccggaccactta 5526225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 30906942 - 30907029
Alignment:
Q  117 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 204  Q
    |||||||||||||| | | | ||||| |||||||||| || |||| |||||||||||| | |||| | | ||||||||| ||||||||    
T  30906942 gaaccaaacaaggtcgaaaacttttttggtttggttcagtctggattttcggtttcatcgattttgtccaaaccacttacacccctat 30907029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 1844 - 1970
Alignment:
Q  17 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 116  Q
    |||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||| |||||| |||| |||| |||| ||| | |||||||||    
T  1844 atcatcggattggttcatcggtttcacgaatctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaacc 1943  T
Q  117 gaaccaaacaaggttggatattttttc 143  Q
    |||||||||||||| ||||||||||||    
T  1944 gaaccaaacaaggtcggatattttttc 1970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 7176529 - 7176662
Alignment:
Q  67 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 166  Q
    |||| ||||||||||||||||||| | || |||||| | | |||  |||| ||||||||||||||||||| |||||||| ||||||||||| |   ||||    
T  7176529 aaccgaaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttc 7176628  T
Q  167 ggtttcattggttttattcgaaccacttaaaccc 200  Q
    |||||||| |||||| | |||| |||||| ||||    
T  7176629 ggtttcatcggttttgtccgaaacacttacaccc 7176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 23301548 - 23301441
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 165  Q
    ||||| |||||||||||||| |||| | || |||||| | |||||  |||||||||||||||||| | ||  |||||||||||||||| ||||| | |||    
T  23301548 gaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttttcggtttggttcagtttgaatttt 23301449  T
Q  166 cggtttca 173  Q
    ||||||||    
T  23301448 cggtttca 23301441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 11971546 - 11971456
Alignment:
Q  113 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||||||||||||||| | |||||  |||||||||| ||||||||| |  ||||| |||||||||||||||   ||||||||| |||||||    
T  11971546 aaccgaaccaaacaagatcggatacattttcggtttagttcggtttaggttttcgatttcattggttttatctaaaccacttacaccccta 11971456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 173
Target Start/End: Complemental strand, 23300583 - 23300455
Alignment:
Q  45 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 144  Q
    |||||| |||| ||||| |  ||||| ||| |||||||||| |||| | || |||||| |  ||||  |||||||||||||||||| |  |  |||||||    
T  23300583 gatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttttcg 23300484  T
Q  145 gtttggttcggtttggactttcggtttca 173  Q
    ||||||||||||||| | |||||||||||    
T  23300483 gtttggttcggtttgaattttcggtttca 23300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 7551423 - 7551525
Alignment:
Q  46 atctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcgg 145  Q
    |||||||||| |||||||| ||||| | |||||| |   |||||| |||| |||||| |||||||  | ||||||||||||| ||||||||  |||||||    
T  7551423 atctcgaaatgaaaaatcaagaaccgacccaaacaaagccggtttagattggttcggtttggttttgatccgaaccaaacaatgttggataccttttcgg 7551522  T
Q  146 ttt 148  Q
    |||    
T  7551523 ttt 7551525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 9826868 - 9826747
Alignment:
Q  72 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa-ggttggatattttttcggtttggttcggtttggactttcggtt 170  Q
    |||||||||||||||||||   || |||||| | |||||  |||||||||||| || ||| ||||| |||| ||||||||||| ||||| | ||| ||||    
T  9826868 aaccaaactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatactttt-cggtttggttcagtttgaatttttggtt 9826770  T
Q  171 tcattggttttattcgaaccact 193  Q
    || | |||||| | |||||||||    
T  9826769 tcttcggttttctccgaaccact 9826747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 23585990 - 23585913
Alignment:
Q  66 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttc 143  Q
    |||||||||||||||| ||||||||   |||||| || | |||||  |||||||| ||||||||| ||||| ||||||    
T  23585990 gaaccaaaccaaactatatcggtttacgttagtttggttcggttttgaaccgaacaaaacaaggtcggatactttttc 23585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 33819 - 33729
Alignment:
Q  113 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 203  Q
    |||| ||||| |||||||  ||||  |||||||||||||||  ||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  33819 aaccaaaccagacaaggtcagatacattttcggtttggttcaatttggactttcagtttcattggttttatccgaaccacttacaccccta 33729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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