View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_4 (Length: 682)

Name: NF10829A_low_4
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_4
NF10829A_low_4
[»] chr6 (9 HSPs)
chr6 (22-117)||(10102277-10102372)
chr6 (543-671)||(10102075-10102203)
chr6 (529-593)||(10079943-10080007)
chr6 (539-593)||(10084142-10084196)
chr6 (543-582)||(10104035-10104074)
chr6 (450-492)||(10080049-10080091)
chr6 (518-550)||(10102218-10102250)
chr6 (450-492)||(10084245-10084287)
chr6 (450-492)||(10096704-10096745)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 10102372 - 10102277
Alignment:
Q  22 gttaaggctttgctttcaaattacatccaatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaaatgagagca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10102372 gttaaggctttgctttcaaattacatccaatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaaatgagagca 10102277  T

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Target: chr6; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 543 - 671
Target Start/End: Complemental strand, 10102203 - 10102075
Alignment:
Q  543 aaaataaaataagtttctttaataattaatttatgagtttgtttaaaagatatttcttgtcaataaattgtcaatcacagttctcacttcccattcatcc 642  Q
    |||| |||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  10102203 aaaaaaaaaaaaatttcgttaataattaatttatgagtttctttaaaagatatttcttgtcaataaattgtcaatcacagctctcactttccattcatcc 10102104  T
Q  643 atccctcctctcttctctgatgtccatct 671  Q
    ||||||||||||||||||| ||| |||||    
T  10102103 atccctcctctcttctctgttgttcatct 10102075  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 529 - 593
Target Start/End: Complemental strand, 10080007 - 10079943
Alignment:
Q  529 atatcatagattataaaataaaataagtttctttaataattaatttatgagtttgtttaaaagat 593  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||  ||||| ||| ||||||    
T  10080007 atatcttaaattataaaataaaataagtttctttaataattaatttaatagtttcttttaaagat 10079943  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 593
Target Start/End: Complemental strand, 10084196 - 10084142
Alignment:
Q  539 ttataaaataaaataagtttctttaataattaatttatgagtttgtttaaaagat 593  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||| ||||||    
T  10084196 ttataaaataaaataagtttctttaataattaatttaatagtttcttttaaagat 10084142  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 582
Target Start/End: Complemental strand, 10104074 - 10104035
Alignment:
Q  543 aaaataaaataagtttctttaataattaatttatgagttt 582  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10104074 aaaataaaataagtttctttaataattaatttataagttt 10104035  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 10080091 - 10080049
Alignment:
Q  450 agccattaaatccaacggttgtaccctctttggcgtgtgaagt 492  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  10080091 agccattaaatccaacggttgtaccctctttagcatgtgaagt 10080049  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 550
Target Start/End: Complemental strand, 10102250 - 10102218
Alignment:
Q  518 acctttgcttaatatcatagattataaaataaa 550  Q
    |||||||||||||||||||||||||||||||||    
T  10102250 acctttgcttaatatcatagattataaaataaa 10102218  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 10084287 - 10084245
Alignment:
Q  450 agccattaaatccaacggttgtaccctctttggcgtgtgaagt 492  Q
    |||||||||||||||||| |||||||||||| || ||||||||    
T  10084287 agccattaaatccaacgggtgtaccctctttagcatgtgaagt 10084245  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 10096745 - 10096704
Alignment:
Q  450 agccattaaatccaacggttgtaccctctttggcgtgtgaagt 492  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  10096745 agccattaaatccaacggttgta-cctctttggcatgtgaagt 10096704  T

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