View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_400 (Length: 233)
Name: NF10829A_low_400
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_400 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 39941085 - 39940856
Alignment:
| Q |
3 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgata |
102 |
Q |
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| T |
39941085 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgata |
39940986 |
T |
|
| Q |
103 |
ctcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttacttcaaaccccttttcaacagaaatctcatcaagttgttcatcgg |
202 |
Q |
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| T |
39940985 |
ctcacgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcgg |
39940886 |
T |
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| Q |
203 |
aggattcgacgtcctgtcgatgaggttctg |
232 |
Q |
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| T |
39940885 |
aggtttcgacgtcacgtcgatgaggttctg |
39940856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 38 - 233
Target Start/End: Complemental strand, 39956731 - 39956536
Alignment:
| Q |
38 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttctg |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
|
| Q |
138 |
ccacgaaggaacagattttacttcaaaccccttttcaacagaaatctcatcaagttgttcatcggaggattcgacgtcctgtcgatgaggttctga |
233 |
Q |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctga |
39956536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 28750694 - 28750890
Alignment:
| Q |
4 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
103 |
Q |
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||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||| ||||||||| || || ||||||||||| || ||||||| || |
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| T |
28750694 |
aaccctaacaatccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagac |
28750793 |
T |
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| Q |
104 |
tcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttacttcaaaccccttttcaacagaaatctcatcaagttgttcatc |
200 |
Q |
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| T |
28750794 |
tcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatc |
28750890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 28741849 - 28742026
Alignment:
| Q |
4 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
103 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||| || |
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| T |
28741849 |
aaccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagac |
28741948 |
T |
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| Q |
104 |
tcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttacttcaaaccccttttcaacagaaa |
181 |
Q |
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|||| | || ||||||||| |||||||| |||||||||| ||||||| |||| |||||||||| ||||||| ||||| |
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| T |
28741949 |
tcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaatagaaa |
28742026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 7963656 - 7963852
Alignment:
| Q |
7 |
cctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactga-taacatgatactc |
105 |
Q |
| |
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|||||||||||||| |||||||||| || ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| || ||||||| |||| |
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| T |
7963656 |
cctaacaacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactc |
7963755 |
T |
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| Q |
106 |
actactattgccctaaccgtaacctgtttctgccacgaaggaacaga-ttttacttcaaaccccttttcaacagaaatctcatcaagttgttcatcg |
201 |
Q |
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|| | ||| | ||||||| |||| | ||||||||| ||||| || |||| |||||||| | ||||| ||| ||||||| || | |||||||||| |
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| T |
7963756 |
acgaatataggcctaaccataacatttttctgccatataggaattgatttttccttcaaacactttttccacataaatctcctctaattgttcatcg |
7963852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 7961143 - 7961307
Alignment:
| Q |
17 |
cagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgc |
116 |
Q |
| |
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|||| |||||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || | || | || |||||| | ||| || |
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| T |
7961143 |
cagcagaaacatttaatgaaggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagc |
7961242 |
T |
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| Q |
117 |
cctaaccgtaacctgtttctgccacgaaggaacagattttacttcaaaccccttttcaacagaaa |
181 |
Q |
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| T |
7961243 |
cataaccgtgacattttggtgccacataggaactgattttccttcaaacccttttttaatagaaa |
7961307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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