View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_406 (Length: 232)
Name: NF10829A_low_406
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_406 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 38883894 - 38884108
Alignment:
| Q |
18 |
ctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggagctgcgaagcccggtacattgcctcccaatgta |
117 |
Q |
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| T |
38883894 |
ctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgta |
38883993 |
T |
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| Q |
118 |
tcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggta |
217 |
Q |
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| T |
38883994 |
tcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggta |
38884093 |
T |
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| Q |
218 |
tgaccctcatgatga |
232 |
Q |
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| T |
38884094 |
tgaccctcatgatga |
38884108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 38893086 - 38893298
Alignment:
| Q |
18 |
ctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggagctgcgaagcccggtacattgcctcccaatgta |
117 |
Q |
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| T |
38893086 |
ctatgatctgttctgcatatcccttgttaccaagttgctgggacgcatatattaccatgttgatggtgccgggaagcccggtacattgccacccaatgta |
38893185 |
T |
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| Q |
118 |
tcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggta |
217 |
Q |
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| T |
38893186 |
tcagctgcggttaatggggttgctttctgtggtacacttacagggcagcttttctttggctggcttggtgataagttgggtaggaagaaagtgtatggta |
38893285 |
T |
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| Q |
218 |
tgaccctcatgat |
230 |
Q |
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| T |
38893286 |
tgacactgatgat |
38893298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 37316106 - 37315993
Alignment:
| Q |
103 |
ttgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcagga |
202 |
Q |
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| T |
37316106 |
ttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagaa |
37316007 |
T |
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| Q |
203 |
aaaaagtctatggt |
216 |
Q |
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| T |
37316006 |
aaaaagtttatggt |
37315993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 30620988 - 30620789
Alignment:
| Q |
22 |
gatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggagctgcgaagcccggtacattgcctcccaatgtatcag |
121 |
Q |
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| T |
30620988 |
gatctattctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcag |
30620889 |
T |
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| Q |
122 |
ctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgac |
221 |
Q |
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| T |
30620888 |
cagcagttaatggcgttgcttttgttgggacactttctggacaactcttcttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgac |
30620789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 33115133 - 33115227
Alignment:
| Q |
130 |
aatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgaccct |
224 |
Q |
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| T |
33115133 |
aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatggaatgaccct |
33115227 |
T |
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