View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_418 (Length: 230)
Name: NF10829A_low_418
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_418 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0204 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 41414749 - 41414972
Alignment:
| Q |
7 |
cctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggtattgcagccaagccta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41414749 |
cctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggtattgcagccaagccta |
41414848 |
T |
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| Q |
107 |
gggataatctccatccccacggtttaatcctttgtgttccaaaattcaccatattggctatgaaaatcccaaaagttgctgccacttgaaacatcatgtt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41414849 |
gggataatctccatccccacggtttaatcctttgtgttccaaaattcaccatattggctatgaaaatcccaaaagttgttgccacttgaaacatcatgtt |
41414948 |
T |
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| Q |
207 |
caatcctcctcgcaggtgggtcgg |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
41414949 |
caatcctcctcgcaggtgggtcgg |
41414972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 36294385 - 36294601
Alignment:
| Q |
11 |
tttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggtattgcagccaagcctaggga |
110 |
Q |
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|||||| | ||||||| | |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
36294385 |
tttcttctaatcctcgttctattaagctgttcggagtctcaggaagaaatattcctcctattgtcatcaaaagagccggtactgcagccaagcctaggga |
36294484 |
T |
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| Q |
111 |
taatctccatccccacggtttaatcctttgtgttccaaaattcaccatattggctatgaaaatcccaaaagttgctgccacttgaaacatcatgttcaat |
210 |
Q |
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| T |
36294485 |
cagcctccatccccatggtttaatcttctgtgttccaaaattcaccatattggcaatgaaaatcccaaaagttgttgccacttgaaacatcatgttcaat |
36294584 |
T |
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| Q |
211 |
cctcctcgcaggtgggt |
227 |
Q |
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| T |
36294585 |
cctcctcgcatgtgggt |
36294601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 19632 - 19444
Alignment:
| Q |
30 |
tattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggtattgcagccaagcctagggataatctccatccccacggt |
129 |
Q |
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||||||||| |||||||| || |||| |||||||||||| || ||||||||||||| || |||||||| | ||| |||| | ||||| ||||| ||| |
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| T |
19632 |
tattaagctatttggagtctctggaataaatattcctccgatagtcatcaaaagagttggaattgcagcaaggccaagggccagcctccacccccagggt |
19533 |
T |
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| Q |
130 |
ttaatcctttgtgttccaaaattcaccatattggctatgaaaatcccaaaagttgctgccacttgaaacatcatgttcaatcctcctcg |
218 |
Q |
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| T |
19532 |
tgaatctgttgtgttccataattgatcatatttgctgtaaaaatcccaaacgtggttgcaacttgaaacatcatgttcaatcctcctcg |
19444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 7440 - 7223
Alignment:
| Q |
7 |
cctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggtattgcagccaagccta |
106 |
Q |
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| T |
7440 |
cctttttcctttgatcctcgttctattaagctatttggagtctccggaataagtattcctccaacagtcatcaaaaccgctggtattgcagcaagtccaa |
7341 |
T |
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| Q |
107 |
gggataatctccatccccacggtttaatcctttgtgttccaaaattcaccatattggctatgaaaatcccaaaagttgctgccacttgaaacatcatgtt |
206 |
Q |
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| T |
7340 |
gggacagcctccacccccatggcttaatattgcgtgttccaaaattgatcatatttgctgcaaaaatgccaagtgtggttgcaacttgaaacatcatgtt |
7241 |
T |
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| Q |
207 |
caatcctcctcgcaggtg |
224 |
Q |
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| T |
7240 |
taggcctcctcgtaggtg |
7223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 48332110 - 48331922
Alignment:
| Q |
30 |
tattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggtattgcagccaagcctagggataatctccatccccacggt |
129 |
Q |
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||||||||| |||||||| || |||| |||||||||||| || ||||||||||||| || |||||||| | ||| |||| | ||||| ||||| ||| |
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| T |
48332110 |
tattaagctatttggagtctctggaataaatattcctccgatagtcatcaaaagagttggaattgcagcaaggccaagggccagcctccacccccagggt |
48332011 |
T |
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| Q |
130 |
ttaatcctttgtgttccaaaattcaccatattggctatgaaaatcccaaaagttgctgccacttgaaacatcatgttcaatcctcctcg |
218 |
Q |
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| T |
48332010 |
tgaatctgttgtgttccataattgatcatatttgctgtaaaaatcccaaacgtggttgcaacttgaaacatcatgttcaatcctcctcg |
48331922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 48344125 - 48343950
Alignment:
| Q |
33 |
taagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggtattgcagccaagcctagggataatctccatccccacggttta |
132 |
Q |
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|||||| |||||||| || |||| |||||||||||| | ||||||||||||| ||||||| ||| | || |||| || ||||| ||||| |||| | |
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| T |
48344125 |
taagctatttggagtctctggaataaatattcctccgacagtcatcaaaagagttggtattgaagcaagtccaagggccaacctccacccccatggttga |
48344026 |
T |
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| Q |
133 |
atcctttgtgttccaaaattcaccatattggctatgaaaatcccaaaagttgctgccacttgaaacatcatgttca |
208 |
Q |
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||| |||||||| |||| | |||||| ||| | |||||||||||||| | ||| ||||||||||||||||||| |
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| T |
48344025 |
atctgctgtgttccgtaattgatcatatttgctgtaaaaatcccaaaagtggttgcaacttgaaacatcatgttca |
48343950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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