View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_42 (Length: 434)
Name: NF10829A_low_42
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 21 - 414
Target Start/End: Complemental strand, 49165780 - 49165389
Alignment:
| Q |
21 |
ttagatatatgtatttggttcaaatatcataaatacatattccttactggtctgtaaacatcccaatgacttgatctcaaattgatagtgaaatttggtt |
120 |
Q |
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| T |
49165780 |
ttagatatatgtatttggttcaaatatcataaatacatattccttactggtctgtaaacatcccaatgacttgatctcaaattgatagtgaaatttggtt |
49165681 |
T |
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| Q |
121 |
tttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatggcctagtctgcagtgagtttctttgagtctccttcgt |
220 |
Q |
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| T |
49165680 |
tttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatggcctagcctgcagtgagtttctttgagtttccttcgt |
49165581 |
T |
|
| Q |
221 |
tcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatagttgcannnnnnnnncttgattctagtgt |
320 |
Q |
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| T |
49165580 |
tcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatagttgca--tttttttcttgattctagtgt |
49165483 |
T |
|
| Q |
321 |
tgtcaatcgtgagtcatnnnnnnntagaggattattcaagctgcattgtagtgccactaaacaacattttgtattaaatagtgtatggtagaac |
414 |
Q |
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| T |
49165482 |
tgtcaatcgtgagtcataaaaaaatagaggattattcaagctgcattgtagtgccactaaacaacattttgtattaaatagtgtatggtagaac |
49165389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 277
Target Start/End: Complemental strand, 43752148 - 43751932
Alignment:
| Q |
58 |
tattccttactggtctgtaaacatcccaatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttctt |
157 |
Q |
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|||| ||||| ||| ||||||||||| |||||||||| ||| ||||||||||||| ||| |||| || |||||||| |||||||| | ||||||||| |
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| T |
43752148 |
tattgcttaccggtttgtaaacatccgcatgacttgatatcactttgatagtgaaatgtggatttttcagagtggatgcgaattgatctgattctttctt |
43752049 |
T |
|
| Q |
158 |
agcttcagaatttttgaaggagcatggcctagtctgcagtgagtttctttgagtctccttcgttcctgaggtatgccaacaaaagtatataatcaattta |
257 |
Q |
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| T |
43752048 |
aacttcagaacttttgaaagagcatgaactagcatggagtgaat---tttgagttgccttctttcctatagtatgccaacaaaagcaaaaaaacaattta |
43751952 |
T |
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| Q |
258 |
caaataagctatgtctattt |
277 |
Q |
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| T |
43751951 |
caaataagctacatctattt |
43751932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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