View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_423 (Length: 230)

Name: NF10829A_low_423
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_423
NF10829A_low_423
[»] chr4 (4 HSPs)
chr4 (1-224)||(54396724-54396947)
chr4 (2-76)||(35132750-35132824)
chr4 (7-76)||(23587525-23587594)
chr4 (7-76)||(23596377-23596446)
[»] chr7 (16 HSPs)
chr7 (6-76)||(7877525-7877595)
chr7 (7-200)||(8017081-8017274)
chr7 (7-76)||(8102974-8103043)
chr7 (9-182)||(39985955-39986128)
chr7 (2-82)||(10494160-10494240)
chr7 (2-73)||(17260543-17260614)
chr7 (6-76)||(8602280-8602350)
chr7 (6-67)||(8382677-8382738)
chr7 (7-76)||(8590945-8591014)
chr7 (2-82)||(13333242-13333322)
chr7 (30-73)||(6789842-6789885)
chr7 (2-76)||(3147574-3147648)
chr7 (6-76)||(8636135-8636205)
chr7 (33-79)||(8659696-8659742)
chr7 (33-82)||(1301797-1301846)
chr7 (33-73)||(8585501-8585541)
[»] chr2 (4 HSPs)
chr2 (7-83)||(12234996-12235072)
chr2 (9-76)||(12245198-12245265)
chr2 (30-79)||(7542556-7542605)
chr2 (6-76)||(16657309-16657379)
[»] chr1 (1 HSPs)
chr1 (6-79)||(4678347-4678420)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 54396724 - 54396947
Alignment:
Q  1 aaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396724 aaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttc 54396823  T
Q  101 agcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396824 agcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttca 54396923  T
Q  201 gcgggacctggaacgactttaaac 224  Q
    ||||||||||||||||||||||||    
T  54396924 gcgggacctggaacgactttaaac 54396947  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  2 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 23587594 - 23587525
Alignment:
Q  7 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    |||| |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  23587594 caccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 23596446 - 23596377
Alignment:
Q  7 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    |||||||||| || |||||||||||||| ||||| ||||| || ||||| || || ||||| ||||||||    
T  23596446 caccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 23596377  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  6 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 8017274 - 8017081
Alignment:
Q  7 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaac 106  Q
    |||| ||||| || || |||||||| || ||||||||||| ||||| ||||| |||||||| ||||||||||| |    ||| ||  ||||||||||||     
T  8017274 caccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagcttcagcaat 8017175  T
Q  107 ttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttca 200  Q
     || | |||||| || |  ||||| || ||||||||||| || ||||||| ||| || ||||| ||||| |||||| | ||||| || ||||||    
T  8017174 ctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggcttttca 8017081  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 8102974 - 8103043
Alignment:
Q  7 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    ||||||||||||| || |||||||| |||||||||||||| |||||||| ||||| || || ||||||||    
T  8102974 caccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattctt 8103043  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 39985955 - 39986128
Alignment:
Q  9 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaactt 108  Q
    |||||||| || ||||||||||| || || ||||| || |||||||| |||||||||||||||||||| |  | |  ||||||  | ||||| ||||  |    
T  39985955 ccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaatct 39986054  T
Q  109 ctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaaca 182  Q
    | | |||||| || | |||||| ||||| || || || || ||||||| ||| |||||||||||||| ||||||    
T  39986055 cacgcatcttcattagcaccatggaagagatctcttcggcagcaaattccttatcttcacctttgtagttaaca 39986128  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 10494240 - 10494160
Alignment:
Q  2 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 82  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactgg 10494160  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  2 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 73  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 8602280 - 8602350
Alignment:
Q  6 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    |||||||||||||| || ||||  || ||||||||||| |||||||| || ||||||||||| ||||||||    
T  8602280 gcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcacagtaacaactgcattctt 8602350  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  6 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 67  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 8590945 - 8591014
Alignment:
Q  7 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    ||||||||||||| |||||||  |  ||||||||||| |||||||| || ||||||||||| ||||||||    
T  8590945 caccagcatctttggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattctt 8591014  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 13333322 - 13333242
Alignment:
Q  2 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 82  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactgg 13333242  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  30 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 73  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  2 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  6 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 8659696 - 8659742
Alignment:
Q  33 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 79  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcac 8659742  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 1301797 - 1301846
Alignment:
Q  33 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 82  Q
    ||||||||||||||||  ||||| |||||||||||||||||  |||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactgg 1301846  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 8585541 - 8585501
Alignment:
Q  33 tgagaatcattgaaataagcaggaacagtaacaacagcatt 73  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  8585541 tgagaatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 12234996 - 12235072
Alignment:
Q  7 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgga 83  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| |||||||| ||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactgga 12235072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  9 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 7542556 - 7542605
Alignment:
Q  30 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 79  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcac 7542605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  6 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 76  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 4678420 - 4678347
Alignment:
Q  6 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 79  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcac 4678347  T

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