View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_424 (Length: 230)
Name: NF10829A_low_424
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_424 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 12843893 - 12843677
Alignment:
| Q |
14 |
gatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttg |
113 |
Q |
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| T |
12843893 |
gatatgattccggttagtctctgcaactttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttg |
12843794 |
T |
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| Q |
114 |
atcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggttcaatggtgaaaatctttcacgtgaatcgatgaatgtaattgtgaggaa |
213 |
Q |
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| T |
12843793 |
atcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggttcaatggtgaaaatctttcacgtgaatcgataaatgtaattgtgaggaa |
12843694 |
T |
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| Q |
214 |
ttggcttgatttcgaag |
230 |
Q |
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| T |
12843693 |
ttggcttgatttcgaag |
12843677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 12861581 - 12861800
Alignment:
| Q |
7 |
tcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggag |
106 |
Q |
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| T |
12861581 |
tcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgcagatcgtaggaagctggag |
12861680 |
T |
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| Q |
107 |
agatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggttcaatggtgaaaatctttcacgtgaatcgatgaatgtaattg |
206 |
Q |
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| T |
12861681 |
agatttgatcatcgcttgcaaatgtggaaaaatcctcaggatttgaggaattacgagttcaatggtgaagctctttcacgtttatcgatggatgaaattg |
12861780 |
T |
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| Q |
207 |
tgaggaattggcttgatttc |
226 |
Q |
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| T |
12861781 |
tgaggaaatgtcttggtttc |
12861800 |
T |
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