View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_429 (Length: 230)
Name: NF10829A_low_429
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_429 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 39956376 - 39956600
Alignment:
| Q |
6 |
aaaccaaaccactctaaactctccaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaac |
105 |
Q |
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| T |
39956376 |
aaaccaaaccactctaaactctcgaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaac |
39956475 |
T |
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| Q |
106 |
aaaaaccaaacactcaacacaaccacactcttcac---tcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgagc |
202 |
Q |
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| T |
39956476 |
aaaaaccaaacactcaacacaaccacacttttcactcatcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaac |
39956575 |
T |
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| Q |
203 |
aacttgatgagatttccgttgaaaa |
227 |
Q |
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| T |
39956576 |
aacttgatgagatttccattgaaaa |
39956600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 39940766 - 39940919
Alignment:
| Q |
75 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactca-acacaaccacactcttcactcatcttcatcgtaacatggcttcagaacctca |
173 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39940766 |
acgaaagcgacttcattaacaatcgcaaaatcaaaaccaaacactctgatacaaccacactcttcactcatcttcatcgtaacatggctccagaacctca |
39940865 |
T |
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| Q |
174 |
tcgacgtgacgtcgaaacctccgatgagcaacttgatgagatttccgttgaaaa |
227 |
Q |
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| T |
39940866 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaa |
39940919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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