View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_43 (Length: 433)
Name: NF10829A_low_43
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 427
Target Start/End: Original strand, 34318937 - 34319354
Alignment:
| Q |
11 |
aaagaatgaagaagatgcaccttaagaacagcaaagagtgcgtttacacactaacatgttggattgtctcctcggataagtacatattggatgcaagtgg |
110 |
Q |
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| T |
34318937 |
aaagaatgaagaagatgcaccttaagaacagcaaagagtgcgtttacacactaacatgtcg-----tctcc---gataagtacatattggatgcaagtgg |
34319028 |
T |
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| Q |
111 |
aatgaccaacaaatcccttcgggaacattgatgtggcttgcacaaacaaaccacatttatctcttaataattgtttacaaaattttgtttcctacatttc |
210 |
Q |
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| T |
34319029 |
aatgaccaacaaatcccttcgggaacattgatgtggattgcacaaacaagccacatttatctcttaataattgtttacaaaattttgtttcctacatttc |
34319128 |
T |
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| Q |
211 |
tctcatgcattagagaacataatagatgatttagagtgag--nnnnnnntattaaacaacatcgattgctttaatttaataaaagtatcttacattctct |
308 |
Q |
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| T |
34319129 |
tctcatgcattagagaacataat-gaggatttagagtgagaaaaaaatatattaaacaacatcgattgctttaatttaataaaagtatcttacattctct |
34319227 |
T |
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| Q |
309 |
tatttttaacttaattatgcaattacagataaaaagtcaca---attcttgactaa-nnnnnnnnccaatacgtacg----tgaatgagattgaattcac |
400 |
Q |
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| T |
34319228 |
tatttttaacttaattatgcaattacagataaaaagtcacaattattcttgactaatttttttttccaatacgtacgtgcatgaatgagattgaattcac |
34319327 |
T |
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| Q |
401 |
gatcatttgctattgagtcccttaact |
427 |
Q |
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| T |
34319328 |
gatcatttgctattgagtcccttaact |
34319354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 23908749 - 23908693
Alignment:
| Q |
167 |
ttatctcttaataattgtttacaaaattttgtttcctacatttctctcatgcattag |
223 |
Q |
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| T |
23908749 |
ttatctcttaatagtagtttacgtaattatgtttcttacatttcactcatgcattag |
23908693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 23920377 - 23920433
Alignment:
| Q |
167 |
ttatctcttaataattgtttacaaaattttgtttcctacatttctctcatgcattag |
223 |
Q |
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||||||||||||| | |||||| |||| |||||| |||||||| |||||||||||| |
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| T |
23920377 |
ttatctcttaatagtagtttacggaattatgtttcttacatttcactcatgcattag |
23920433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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