View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_430 (Length: 230)
Name: NF10829A_low_430
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_430 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 24370469 - 24370687
Alignment:
| Q |
1 |
gagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgtttaggacattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24370469 |
gagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaaattcatgtttactaaagtgacagagtttatgcatctgtttaggacattgt |
24370568 |
T |
|
| Q |
101 |
tgtagcttaaaccaagttaaactttcctttccatcaaataggttgagtgaattaataaccttcacctttggttgtagatgaacttcattttgaaatattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24370569 |
tgtagcttaaaccaagttaaactttcctttccatcaaataggttgagtgaagtaataaccttcacctttggttgtagctgaacttcattttgaaatattt |
24370668 |
T |
|
| Q |
201 |
tgaaggaaatgtctatggt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
24370669 |
tgaaggaaatgtctatggt |
24370687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 24364074 - 24363972
Alignment:
| Q |
1 |
gagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgtttaggacattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
24364074 |
gagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgtttactaaagtgacagagtttatgcgtctgttttagagattgt |
24363975 |
T |
|
| Q |
101 |
tgt |
103 |
Q |
| |
|
||| |
|
|
| T |
24363974 |
tgt |
24363972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 24352660 - 24352746
Alignment:
| Q |
4 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgttt |
90 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
24352660 |
atgtttgtgtctttgaactgataaacaaggaaaatttagtttttaaagttcatgttttctaaaggaacagagttgatgtatctgttt |
24352746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24362907 - 24362979
Alignment:
| Q |
1 |
gagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacag |
73 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
24362907 |
gagatgtttgtgtctttgaactgacaaacaagcaagatttagtttttaaaattcatgttttataaagggacag |
24362979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 24356065 - 24356127
Alignment:
| Q |
4 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaa |
66 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
24356065 |
atgtttgtgtcttcgaactgataaacaaggaaggtttagtttttaaagttcatgttttctaaa |
24356127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24346955 - 24347003
Alignment:
| Q |
1 |
gagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaa |
49 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
24346955 |
gagatgtttgtgtctttgaactgataaacaagaaggatttggtttttaa |
24347003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 24314062 - 24314129
Alignment:
| Q |
6 |
gtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacag |
73 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| |||||| || | |||||||||| |
|
|
| T |
24314062 |
gtttgtgtctttgaactgataaacaagaaggatttggtttttaatgttcatattaccaaaagtgacag |
24314129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24359391 - 24359454
Alignment:
| Q |
1 |
gagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttcta |
64 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
24359391 |
gagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatattttcta |
24359454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 24363951 - 24363889
Alignment:
| Q |
155 |
ataaccttcacctttggttgtagatgaacttcattttgaaatattttgaaggaaatgtctatg |
217 |
Q |
| |
|
|||| |||||| ||||||||||| || | || | |||||||||||||||||||||| |||||| |
|
|
| T |
24363951 |
ataatcttcacatttggttgtagttgtatttaagtttgaaatattttgaaggaaatatctatg |
24363889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University