View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_436 (Length: 230)
Name: NF10829A_low_436
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_436 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 7172806 - 7172939
Alignment:
| Q |
91 |
tatcaaatcttaaggatatagcatccaaatgtgatctcacagcaaggctcatgtctcaagcaaataagtttataataaaatgtgttttcaagcagtgatc |
190 |
Q |
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| T |
7172806 |
tatcaaatcttaaggaaatagcatccaaatgtgatctcacagcaaggctcatgtctcaagcaaataagtttataataaaatgtgttttcaagcagtgatc |
7172905 |
T |
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| Q |
191 |
ccaactcagcacatacaacttttgaagtcctatt |
224 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7172906 |
ccaactcagcacatacaacttttgaagtcctatt |
7172939 |
T |
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Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 7166413 - 7166617
Alignment:
| Q |
1 |
aaggtctcaaaaagattgattgagat-aacttttattaccaataaataaataacccctggatggaattctgtaagcatgaagctaaacatgtatcaaatc |
99 |
Q |
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||||||||||||||||||| |||| | |||||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||||||||||| |||| |
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| T |
7166413 |
aaggtctcaaaaagattgaatgagcttaacttttattaccaatgtataaacaacct-tggatggaattaagtaagcataaagctaaacatgtatccaatc |
7166511 |
T |
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| Q |
100 |
ttaaggatatagcatccaaatgtgatctcacagcaaggctcatgtctcaagcaaataagtttataataaaatgtgttttcaagcagtgatcccaactcag |
199 |
Q |
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||||||| ||||||||| |||| ||||||||| ||||||||| |||||||||| |||| ||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
7166512 |
ttaaggaaatagcatcccaatgcgatctcacaaaaaggctcatatctcaagcaagtaagcttatagtaaaatatgttttcaagcagcgatcccaactcag |
7166611 |
T |
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| Q |
200 |
cacata |
205 |
Q |
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|||||| |
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| T |
7166612 |
cacata |
7166617 |
T |
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