View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_438 (Length: 230)

Name: NF10829A_low_438
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_438
NF10829A_low_438
[»] chr6 (20 HSPs)
chr6 (1-224)||(6589337-6589560)
chr6 (1-222)||(7994196-7994417)
chr6 (1-161)||(6415891-6416051)
chr6 (1-214)||(6394736-6394949)
chr6 (14-161)||(14818307-14818454)
chr6 (1-161)||(14820618-14820778)
chr6 (120-211)||(19632314-19632405)
chr6 (1-161)||(6432086-6432246)
chr6 (1-206)||(6423097-6423302)
chr6 (10-79)||(10579759-10579828)
chr6 (1-161)||(6594620-6594780)
chr6 (17-220)||(6402723-6402929)
chr6 (10-57)||(6596951-6596998)
chr6 (10-161)||(7119082-7119233)
chr6 (10-161)||(7131560-7131711)
chr6 (1-79)||(6410013-6410091)
chr6 (1-79)||(14802343-14802421)
chr6 (12-161)||(6585262-6585411)
chr6 (109-158)||(6603324-6603373)
chr6 (129-175)||(10579879-10579925)
[»] chr3 (3 HSPs)
chr3 (2-161)||(13470747-13470906)
chr3 (1-161)||(51764454-51764614)
chr3 (131-161)||(51121037-51121067)
[»] chr7 (2 HSPs)
chr7 (2-158)||(10614521-10614677)
chr7 (1-211)||(15092165-15092375)
[»] chr8 (2 HSPs)
chr8 (12-159)||(27922435-27922582)
chr8 (1-72)||(18315287-18315358)
[»] chr5 (4 HSPs)
chr5 (1-156)||(41901549-41901704)
chr5 (12-159)||(32267402-32267549)
chr5 (10-71)||(20478105-20478166)
chr5 (12-150)||(41889579-41889717)
[»] chr4 (10 HSPs)
chr4 (1-161)||(53761786-53761943)
chr4 (12-160)||(546839-546987)
chr4 (17-57)||(1537797-1537837)
chr4 (12-78)||(640923-640989)
chr4 (1-59)||(659736-659794)
chr4 (11-157)||(1548448-1548594)
chr4 (11-57)||(8187115-8187161)
chr4 (1-161)||(644756-644915)
chr4 (17-57)||(12121487-12121527)
chr4 (117-161)||(55505235-55505279)
[»] chr1 (3 HSPs)
chr1 (1-72)||(19468513-19468584)
chr1 (5-71)||(9586654-9586720)
chr1 (12-72)||(52082595-52082655)
[»] scaffold0807 (1 HSPs)
scaffold0807 (1-79)||(1478-1559)
[»] scaffold0041 (1 HSPs)
scaffold0041 (14-93)||(39177-39256)
[»] chr2 (1 HSPs)
chr2 (129-166)||(45245227-45245264)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6589337 - 6589560
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6589337 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 6589436  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6589437 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagatttatctgggggatattcatttaagtg 6589536  T
Q  201 acaaaactagggaaatcttctccc 224  Q
    ||||||||||||||||||||||||    
T  6589537 acaaaactagggaaatcttctccc 6589560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7994196 - 7994417
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    |||||| | ||| |||||||||||| ||||||||||||  ||||||||  ||||||||||| |||||||||| ||||||   || ||| ||||| ||| |    
T  7994196 agttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactatta 7994295  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtg 200  Q
    ||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||||| | |||  |||||||| || | |||||| ||||| ||||||    
T  7994296 cttgaactttgtaatgatgttaccgaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtg 7994395  T
Q  201 acaaaactagggaaatcttctc 222  Q
    |||||| ||||||| |||||||    
T  7994396 acaaaaatagggaactcttctc 7994417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6416051 - 6415891
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    ||||||||  ||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||| |||||||  |||||| ||||| ||| |    
T  6416051 agttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgcaactatta 6415952  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||| || ||||| || ||||||| || | ||||||||||||||||||||| ||||||||||    
T  6415951 cttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaactgcacac 6415891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6394949 - 6394736
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    |||||||  |||||||||||||||||||||||||||||  ||| ||||| |||| || | | |||||||||| ||||||   |||||| ||||||||  |    
T  6394949 agttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaa 6394850  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtg 200  Q
    ||| |   ||||||  ||||||| ||  |||| ||| |||||||||||||||||||||||| | |   ||||||| || ||||||||||| || ||||||    
T  6394849 cttgataattgtaaaaatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtg 6394750  T
Q  201 acaaaactagggaa 214  Q
    || ||| |||||||    
T  6394749 acgaaaatagggaa 6394736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 14818454 - 14818307
Alignment:
Q  14 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttgta 113  Q
    |||||||||||||| ||||||||||| ||| || || ||||||| ||| ||||||| || ||||||   |||||| ||| ||||| |||| ||  |||||    
T  14818454 gaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattattacttgaaaattgta 14818355  T
Q  114 attatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    || ||||||| ||| |||| ||||||||||| ||||||||||||||||    
T  14818354 ataatgtcacagagaagggtgtgaaacatgtagtagaaaactgcacac 14818307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 14820778 - 14820618
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    |||||||| | | |||||||||||||| ||||||||||| ||| || || ||||||| ||| ||||||| || ||||||   |||||| ||| ||||| |    
T  14820778 agttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgcgattatta 14820679  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||| ||   |||||| ||||||| ||| |||| ||||||||||||||| ||||||||||||    
T  14820678 cttgaaaaatgtaatgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacac 14820618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 19632405 - 19632314
Alignment:
Q  120 tcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtgacaaaactagg 211  Q
    |||| ||| ||||||||||||| |||||||||||||||| || |||  | |||||| || ||||||||||||||| ||||||||||||||||    
T  19632405 tcacagagaagggagtgaaacacgtggtagaaaactgcaaacaactgaaggagatttatttgggggatattcattcaagtgacaaaactagg 19632314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6432246 - 6432086
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    |||||||| |||| ||||||||||||||||||||||||  ||| ||||| ||||||| ||| |||||| ||| ||||||   |||||| ||||| |||      
T  6432246 agttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattc 6432147  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||  |   |||| || |||||||  || |||||||||||| |||||||||||| |||||||    
T  6432146 ctgtacaattgtgataatgtcacacagaagggagtgaaacttgtggtagaaaaatgcacac 6432086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6423302 - 6423097
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    |||||||| |||||||||||||||||||||||||||||  ||||  ||||||||||| |||  ||||||||| | ||||   ||| || ||||| ||| |    
T  6423302 agttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttgcaactatta 6423203  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtg 200  Q
    ||| ||  |||| ||||||| ||  |  | ||| |||||| |||||||  ||||||||||| | |   ||||||| || |||| ||| ||||| ||||||    
T  6423202 cttgaagattgtgattatgtaacaaacaaaggactgaaacgtgtggtattaaactgcacacaattgagagagatttatttgggagattttcatgtaagtg 6423103  T
Q  201 acaaaa 206  Q
    ||||||    
T  6423102 acaaaa 6423097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 10579759 - 10579828
Alignment:
Q  10 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgt 79  Q
    |||||||||||||||||||||| ||||||| ||| ||||||||||||| |||  ||||||||| ||||||    
T  10579759 gctggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgt 10579828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 6594620 - 6594780
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    ||||||||  |||||||||||| |||||||||||||| | ||| ||||| | ||||||  | |||||||||| ||||||   |||||| | ||| ||  |    
T  6594620 agttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggcttttacaactaaaa 6594719  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||  ||  |||| || || |||| ||||||||||  |||||||||||||||||||||||||    
T  6594720 ctagaaaattgtgatcatctcacagaggagggagccaaacatgtggtagaaaactgcacac 6594780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 6402929 - 6402723
Alignment:
Q  17 gtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttgtaatt 116  Q
    ||||||||||||||| |||| || ||| ||||| ||||||| ||| |||||||||| |||||||  |||||| || || ||| | |   |  |||| ||     
T  6402929 gtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgagagattgttata 6402830  T
Q  117 atgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctggggg---atattcatttaagtgacaaaactaggga 213  Q
    ||||||| ||  |||||| |||||||||| |||||||||| |||| |||   ||||||| || || |||    | ||||||||| |||||||||||||||    
T  6402829 atgtcacagaaaagggagcgaaacatgtgatagaaaactgtacacaactgagagagatttatttgagggtttgttttcatttaactgacaaaactaggga 6402730  T
Q  214 aatcttc 220  Q
    | |||||    
T  6402729 actcttc 6402723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 6596951 - 6596998
Alignment:
Q  10 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacact 57  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||    
T  6596951 gctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacact 6596998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 7119233 - 7119082
Alignment:
Q  10 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactt 109  Q
    |||||||||||||||||||||| |||| || ||| ||||| |||||||  || ||||||| || ||||||   |||||| || || ||| |||  ||  |    
T  7119233 gctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagat 7119134  T
Q  110 tgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||| ||||||||||  |  | | |||||||||||||| ||||||||||||||    
T  7119133 tgttattatgtcacaaaaaaagaagtgaaacatgtggaagaaaactgcacac 7119082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 7131711 - 7131560
Alignment:
Q  10 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactt 109  Q
    |||||||||||||||||||||| |||| || ||| ||||| |||||||  || ||||||| || ||||||   |||||| || || ||| |||  ||  |    
T  7131711 gctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagat 7131612  T
Q  110 tgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||| ||||||||||  |  | | |||||||||||||| ||||||||||||||    
T  7131611 tgttattatgtcacaaacaaagcagtgaaacatgtggaagaaaactgcacac 7131560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6410091 - 6410013
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgt 79  Q
    |||||||| |||| |||||||||||| |||||||||||  ||| ||||| |||| || ||| |||||||||| ||||||    
T  6410091 agttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgt 6410013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 14802421 - 14802343
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgt 79  Q
    |||||||| | |||| |||||||| |||||||||||||| ||| ||||| ||||||| ||| |||| ||||| ||||||    
T  14802421 agttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgt 14802343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 6585262 - 6585411
Alignment:
Q  12 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 111  Q
    ||||||| |||||||||||| ||||||| ||| ||||| ||||||| ||| |||||||||| | ||||   | |||| || || ||| |||  ||  |||    
T  6585262 tggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttg 6585361  T
Q  112 taattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    | |  ||||||| ||| ||||| ||||||||||||||||||  |||||||    
T  6585362 tgaaaatgtcacagagaagggactgaaacatgtggtagaaatttgcacac 6585411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 6603324 - 6603373
Alignment:
Q  109 ttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgca 158  Q
    |||| |||||||||| ||| | ||||||||||||||||||||||||||||    
T  6603324 ttgttattatgtcacagagaaaggagtgaaacatgtggtagaaaactgca 6603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 10579879 - 10579925
Alignment:
Q  129 agggagtgaaacatgtggtagaaaactgcacacgacttcaagagatt 175  Q
    ||||||| ||||||||||||||||||||||||| ||||  |||||||    
T  10579879 agggagttaaacatgtggtagaaaactgcacacaacttagagagatt 10579925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 13470747 - 13470906
Alignment:
Q  2 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 101  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||   |||||| ||||| ||| ||    
T  13470747 gttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattac 13470846  T
Q  102 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    || |||||||| || ||||||| || ||||||||||||||||||||||| ||||||||||    
T  13470847 ttgaactttgtcataatgtcacagaagagggagtgaaacatgtggtagagaactgcacac 13470906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 51764454 - 51764614
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    |||||| | ||||||||||||  ||||||||  |||||| ||| ||||||||||||| |||  ||||||||| ||||||   |||||| ||||| ||| |    
T  51764454 agttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactatta 51764553  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||  ||| |||| || |||||| |||| ||||||||||||||||||| |||||||||||||    
T  51764554 ctggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttgaaaactgcacac 51764614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Original strand, 51121037 - 51121067
Alignment:
Q  131 ggagtgaaacatgtggtagaaaactgcacac 161  Q
    |||||||||||||||||||||||||||||||    
T  51121037 ggagtgaaacatgtggtagaaaactgcacac 51121067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 10614677 - 10614521
Alignment:
Q  2 gttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcac 101  Q
    |||||||  |||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||| || || ||||  |||||| ||||| ||| ||    
T  10614677 gttcccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattac 10614578  T
Q  102 ttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgca 158  Q
    || |||||| | || ||||||| || || ||||||||||||||||||||||||||||    
T  10614577 ttgaactttctcataatgtcacagaagaaggagtgaaacatgtggtagaaaactgca 10614521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 15092165 - 15092375
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    |||||||  ||||||||||||||| |||||| | ||||| ||||||||||||||||| |||  ||||||||| ||||||   |||||| ||||| ||| |    
T  15092165 agttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactatta 15092264  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagattcatctgggggatattcatttaagtg 200  Q
    ||| || ||||| || ||||||| || | |||||||||||||||| ||||||||||||||| | |   ||||||| || || || |||| ||| ||||||    
T  15092265 cttgaattttgttataatgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttgcggtatatccatgtaagtg 15092364  T
Q  201 acaaaactagg 211  Q
    |||||||||||    
T  15092365 acaaaactagg 15092375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 27922582 - 27922435
Alignment:
Q  12 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 111  Q
    |||||||||||||||||||| ||||||||||| ||||| || |||| ||| |||||||||| | ||||   |||||| || |||| |||||| ||  |||    
T  27922582 tggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattg 27922483  T
Q  112 taattatgtcacggaggagggagtgaaacatgtggtagaaaactgcac 159  Q
    |||| || ||||  || |||||||||| ||||||||||||||||||||    
T  27922482 taatgatttcacaaagaagggagtgaaccatgtggtagaaaactgcac 27922435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18315287 - 18315358
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 72  Q
    ||||||||  ||||||||||||||||||||| ||||||| ||| ||||| || |||| ||| ||||||||||    
T  18315287 agttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaa 18315358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 41901549 - 41901704
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    ||||||||  ||||||||||||||||||||| ||||||| ||| ||||| || |||| ||| |||||||||| | ||||   || ||| || |||| |||    
T  41901549 agttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtca 41901648  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactg 156  Q
    ||||||  ||||||| |||||||  || |||||||||| |||||||||||||||||    
T  41901649 cttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaactg 41901704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 32267549 - 32267402
Alignment:
Q  12 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 111  Q
    ||||||| |||||||||||| | ||||  ||| ||||| || |||| ||| |||||||||| | ||||   |||||| || |||| |||||| ||  |||    
T  32267549 tggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattg 32267450  T
Q  112 taattatgtcacggaggagggagtgaaacatgtggtagaaaactgcac 159  Q
    |||| || ||||  || |||||||||| ||||| ||||||||||||||    
T  32267449 taatgatatcacaaagaagggagtgaagcatgtagtagaaaactgcac 32267402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 20478105 - 20478166
Alignment:
Q  10 gctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaa 71  Q
    |||||||||||||||||||||| ||||||||||| ||||  ||||| ||| | |||||||||    
T  20478105 gctggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaa 20478166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 41889579 - 41889717
Alignment:
Q  12 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 111  Q
    |||||||||||||||| ||| ||||||| ||| ||||| ||||||| |||  ||||||||| | ||||   ||||||  | |||| | |||| ||  |||    
T  41889579 tggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattg 41889678  T
Q  112 taattatgtcacggaggagggagtgaaacatgtggtaga 150  Q
    | || |||||||  || |||||||||| |||||||||||    
T  41889679 ttatgatgtcacaaagaagggagtgaatcatgtggtaga 41889717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 53761786 - 53761943
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    |||||||| ||| |||| |||||||||||||  ||| || ||||| ||||||||||| | |  |||||| || ||||||   |||||| |||||| || |    
T  53761786 agttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactctgt--gatctcgaagaattgtcgtgggcttttgcaat-atta 53761882  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||  ||| |||| || ||||||||||  |||||||||||||||||| ||||||||||||||    
T  53761883 ctgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcacac 53761943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 546987 - 546839
Alignment:
Q  12 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttg 111  Q
    |||||||| |||||||||||  ||||| ||| |||||| ||||||| ||| |||||||||| | ||||   |||||| || |||| | |||  ||   ||    
T  546987 tggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatg 546888  T
Q  112 taattatgtcacggaggagggagtgaaacatgtggtagaaaactgcaca 160  Q
    |  | ||||||| ||| ||||||||||||||||| ||||||||||||||    
T  546887 ttttcatgtcacagagaagggagtgaaacatgtgctagaaaactgcaca 546839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 1537797 - 1537837
Alignment:
Q  17 gtgttgaacttgtcaaatacaaatgttaatgataaaacact 57  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  1537797 gtgttgaacttgtcatatacaaatgttaatgacaaaacact 1537837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 640989 - 640923
Alignment:
Q  12 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattg 78  Q
    |||||||||||||||||||| ||||||| ||| ||||| ||||||| ||  ||| |||||| |||||    
T  640989 tggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattg 640923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 659794 - 659736
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactat 59  Q
    ||||||||  || |||||||||||||||||| |||||| ||||||| || |||||||||    
T  659794 agttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacactat 659736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 1548448 - 1548594
Alignment:
Q  11 ctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaacttt 110  Q
    ||||||||||||||||||||| |||||| | || ||||| |||||||  || |||||||||| | ||||   |||||| |||| || | ||   ||| ||    
T  1548448 ctggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgtt 1548547  T
Q  111 gtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgc 157  Q
    ||||  || |||| ||| |||||||||||||| | | ||||||||||    
T  1548548 gtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgc 1548594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 8187115 - 8187161
Alignment:
Q  11 ctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacact 57  Q
    ||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  8187115 ctggaggtgttgaacttgtcacatacaagagttgatgataaaacact 8187161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 644915 - 644756
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatca 100  Q
    ||||||||  |||||||||||  ||||||||  |||||  ||| | |||||| || | ||| |||||||||| | ||| |  |||||| ||||| | |||    
T  644915 agttcccaaactggaggtgttagacttgtcatttacaagagtttacgataaatcatt-tatttgatctcaaagagttgcagcgggcttgtgcaactgtca 644817  T
Q  101 cttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||| || ||||| |   |||||||||| | ||||||||||||||||| ||||| |||||||    
T  644816 cttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacac 644756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 12121487 - 12121527
Alignment:
Q  17 gtgttgaacttgtcaaatacaaatgttaatgataaaacact 57  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  12121487 gtgttgaacttgtcatatacaaatgttgatgatgaaacact 12121527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 55505235 - 55505279
Alignment:
Q  117 atgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 161  Q
    ||||||| ||| ||||||||||||| ||| |||||||||||||||    
T  55505235 atgtcacagagaagggagtgaaacacgtgttagaaaactgcacac 55505279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19468513 - 19468584
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 72  Q
    |||||||| ||||||||||||||| |||||| ||||||| ||| ||||| ||||||| ||| ||||||||||    
T  19468513 agttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaa 19468584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 9586720 - 9586654
Alignment:
Q  5 cccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaa 71  Q
    |||| ||| |||||||||||||||||| ||||| ||||||||||| ||||||| ||| ||| |||||    
T  9586720 cccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaa 9586654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 52082655 - 52082595
Alignment:
Q  12 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 72  Q
    |||||||||||||||||||||| |||||  || ||||| ||||| | ||| ||||||||||    
T  52082655 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaa 52082595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1478 - 1559
Alignment:
Q  1 agttcccatgctggaggtgttgaacttgtcaaatacaaatgt---taatgataaaacactatatctgatctcaaaaaattgt 79  Q
    |||||| | ||| ||||||||| |||||||||||||||||||   | ||||| ||||||| ||| |||||||||| ||||||    
T  1478 agttcctaagctagaggtgttggacttgtcaaatacaaatgttgatgatgatgaaacactctatgtgatctcaaagaattgt 1559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 39256 - 39177
Alignment:
Q  14 gaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgca 93  Q
    ||||||||||||||| ||  |||||| ||||||||| ||||||| ||| |||||||||| | |||||  |||||| ||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgca 39177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 45245227 - 45245264
Alignment:
Q  129 agggagtgaaacatgtggtagaaaactgcacacgactt 166  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  45245227 agggagtgaaacatgtggtagaaaattgcacacaactt 45245264  T

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