View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_440 (Length: 230)
Name: NF10829A_low_440
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_440 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 40062475 - 40062532
Alignment:
| Q |
167 |
ttaacattaacatgaaacttaattaccttaactggactaggattcggagctctgaaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40062475 |
ttaacattaacatgaaacttaattaccttaactggactaggattcggagctctgaaat |
40062532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 40062404 - 40062461
Alignment:
| Q |
42 |
taacaaaaccttttaaataatgttctctatataa-tattcatgctagcaacgtcaatt |
98 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
40062404 |
taacaaaactctttaaataatgttctctatataattactcatgctagcaacgtcaatt |
40062461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11872889 - 11872925
Alignment:
| Q |
1 |
tgaatggataagtttctataaaaacttactatctaaa |
37 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
11872889 |
tgaatgtataagtttttataaaaacttactatctaaa |
11872925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46895996 - 46896032
Alignment:
| Q |
1 |
tgaatggataagtttctataaaaacttactatctaaa |
37 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
46895996 |
tgaatgcataaatttctataaaaacttactatctaaa |
46896032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University