View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_441 (Length: 230)

Name: NF10829A_low_441
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_441
NF10829A_low_441
[»] chr6 (3 HSPs)
chr6 (7-230)||(663772-664000)
chr6 (168-230)||(908100-908162)
chr6 (170-214)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (63-126)||(44172881-44172944)
chr7 (59-133)||(36314611-36314685)
chr7 (43-109)||(38134414-38134480)
chr7 (169-217)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (169-220)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (47-120)||(16315862-16315935)
chr5 (72-120)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (58-126)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (58-120)||(18513238-18513300)
chr4 (50-99)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (44-109)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (49-126)||(43328458-43328535)
chr1 (172-220)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 664000 - 663772
Alignment:
Q  7 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664000 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 663901  T
Q  107 tgttagtgttgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 201  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663900 tgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 663801  T
Q  202 tacatgtgtcggtgttagatacttacatg 230  Q
    |||||||||||||||||||||||||||||    
T  663800 tacatgtgtcggtgttagatacttacatg 663772  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 908100 - 908162
Alignment:
Q  168 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatg 230  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| |||||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatg 908162  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  170 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 214  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  63 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 126  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| |||||||||| ||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
Q  59 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgttagacac 133  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| ||||||| || ||||| |||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac 36314611  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
Q  43 ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 109  Q
    |||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134480 ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  169 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 217  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  169 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 220  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 16315862 - 16315935
Alignment:
Q  47 attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 120  Q
    |||||||||||||||||||| |||||||||| | |||  ||| || ||||||||||||||| |  |||||||||    
T  16315862 attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgtatctgtgttgtgt 16315935  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 19625976 - 19625928
Alignment:
Q  72 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 120  Q
    |||||||| |||| ||| || ||||||||||||||||| ||||||||||    
T  19625976 tttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgt 19625928  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 8039206 - 8039274
Alignment:
Q  58 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 126  Q
    |||||||||||||||||||||| |||||||  |||||||||| || | ||||  ||||||||| |||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgt 8039274  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
Q  58 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 120  Q
    ||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
Q  50 gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa 99  Q
    ||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
Q  44 gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 109  Q
    |||||||||| |||||||||| | |||||||||||  |||  ||| || |||||||||||||||||    
T  6501481 gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 43328458 - 43328535
Alignment:
Q  49 tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 126  Q
    ||||| ||||||||| || |||||||||||| |||  ||| || ||||||||||||||||| | ||| ||||| ||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt 43328535  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  172 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 220  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

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