View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_452 (Length: 229)
Name: NF10829A_low_452
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_452 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 35095214 - 35095435
Alignment:
| Q |
8 |
ttacttttgtgctttctattagcataattgatttgaaatttctttttaacgtcatttttgtttagaagaaaatctcaagtacatcaacagtttaatgttg |
107 |
Q |
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| T |
35095214 |
ttacttttgtgctttctattagcataattgatttgaaatttctttttaacgtcatttttgtgtagaagaaaatctcaagtacatcaacagtttaatgttg |
35095313 |
T |
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| Q |
108 |
ttactatccgagtgatcaacttggttgacttttccttttagatgattgttaacccgagttcatggggtactttagaacgctttcaaaggtttaaatactc |
207 |
Q |
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| T |
35095314 |
ttactatccgagtgatcaacttggtcgacttttccttttagatgattgttaacccgagttcatgggatactttagaacgctttcaaaggtttaaatactc |
35095413 |
T |
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| Q |
208 |
ctaaattacaactaaaataagg |
229 |
Q |
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||||| |||| ||||||||||| |
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| T |
35095414 |
ctaaactacagctaaaataagg |
35095435 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 32587672 - 32587757
Alignment:
| Q |
8 |
ttacttttgtgctttctattagcataattgatttgaaat-ttctttttaacgtca-----tttttgtttagaagaaaatctcaagt |
87 |
Q |
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|||||||||||||||||||| ||||||||||||| || |||||||||| |||| ||||||||| |||||||||||||||| |
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| T |
32587672 |
ttacttttgtgctttctattggcataattgatttttcatattctttttaatgtcattttttttttgtttggaagaaaatctcaagt |
32587757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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