View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_453 (Length: 229)
Name: NF10829A_low_453
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_453 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 31252154 - 31251931
Alignment:
| Q |
6 |
aaatccatctctcctgcatcacaaattaatgttggccctgataattctcatcacaaattccttttgattatatgattaattaacatctaattgattctta |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
31252154 |
aaatccatctctcctgcatcacaaattaatgttggccctgataattctcatcacaaattccttttgattctatgatttattaacatctaattgattctta |
31252055 |
T |
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| Q |
106 |
tctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31252054 |
tctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgct |
31251955 |
T |
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| Q |
206 |
acccctaataaatcaccacttttg |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
31251954 |
acccctaataaatcaccacttttg |
31251931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 25814990 - 25815212
Alignment:
| Q |
6 |
aaatccatctctcctgcatcacaaattaatgttggccctgataattctcatcacaaattccttttgattatatgattaattaacatctaattgattctta |
105 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
25814990 |
aaatccatctctcttgcattacaaattaatgttggccctaataattctcatcacaaattccttttgattttatgattaattaacatcta-ttgattctta |
25815088 |
T |
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| Q |
106 |
tctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgct |
205 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25815089 |
tctcatttcattaccatgtataaaatgaccccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgct |
25815188 |
T |
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| Q |
206 |
acccctaataaatcaccacttttg |
229 |
Q |
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| T |
25815189 |
acccctaataaatcaccacttttg |
25815212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 23052768 - 23052912
Alignment:
| Q |
6 |
aaatccatctctcctgcatcacaaattaatgttggccctgataattctcatcacaaattccttttgattatatgattaattaacatctaattgattctta |
105 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
23052768 |
aaatccatctctcctgcatcacatattaatgttggttctgataaatctcataacaaatttattttgattttatgattaattaacatctaattgattctca |
23052867 |
T |
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| Q |
106 |
tctcatttcattaccatgtataaaatcactccattagatgataaa |
150 |
Q |
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||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
23052868 |
tctcattccatcaccatgtataaaatcacctcattagatgataaa |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 23052912 - 23052956
Alignment:
| Q |
181 |
aagttttatgcagttttggaatgctacccctaataaatcaccactt |
226 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
23052912 |
aagttttatgcagttttggaatggt-cccctaataaatcaccactt |
23052956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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