View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_456 (Length: 229)
Name: NF10829A_low_456
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_456 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5823565 - 5823787
Alignment:
| Q |
1 |
ttgacgagtcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaa |
100 |
Q |
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| T |
5823565 |
ttgacgagtcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaa |
5823664 |
T |
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| Q |
101 |
agttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaa |
200 |
Q |
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| T |
5823665 |
agttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaacgtgctgttgagtatcgattcggataaa |
5823764 |
T |
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| Q |
201 |
acagacgaatcagagcttcaaaa |
223 |
Q |
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| T |
5823765 |
acagacgaatcggagcttcaaaa |
5823787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 5832466 - 5832252
Alignment:
| Q |
9 |
tcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaagttggtg |
108 |
Q |
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| T |
5832466 |
tcacctccaaagctagtagaccttgctgatgtccaaattggtaaattttatgagcttgtaatcacaacttattccggtttttgccgttacagagttggtg |
5832367 |
T |
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| Q |
109 |
atattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaacagacga |
208 |
Q |
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| T |
5832366 |
atattcttcaagtcaatggattccataattctgatcctcagttcaaattcgtgaggcgaaagaacgtgttgttgagtatcgattcggataaaacagacga |
5832267 |
T |
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| Q |
209 |
atcagagcttcaaaa |
223 |
Q |
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| T |
5832266 |
atcggagcttcaaaa |
5832252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 78424 - 78554
Alignment:
| Q |
93 |
cgttacaaagttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgata |
192 |
Q |
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| T |
78424 |
cgttacagagttggtgacattctccgtgtcaccgggtttcataactcaacaccacaattccattttgtgcgtcgaaagaatgtgttgcttagtattgatt |
78523 |
T |
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| Q |
193 |
tggataaaacagacgaatcagagcttcaaaa |
223 |
Q |
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| T |
78524 |
cggataaaacagatgagtcagagctacaaaa |
78554 |
T |
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