View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_461 (Length: 228)
Name: NF10829A_low_461
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_461 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 31506872 - 31506658
Alignment:
| Q |
8 |
gcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactgtcggcaacaataccggcac |
107 |
Q |
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| T |
31506872 |
gcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactgtcggcaacaataccggcac |
31506773 |
T |
|
| Q |
108 |
cagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagttggaaatactattgtccttag |
207 |
Q |
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| T |
31506772 |
cagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagttggaaatactattgtccttag |
31506673 |
T |
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| Q |
208 |
agctagagcaatgtc |
222 |
Q |
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||||||||||||||| |
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| T |
31506672 |
agctagagcaatgtc |
31506658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34495880 - 34496101
Alignment:
| Q |
1 |
aacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactgtcggcaacaata |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34495880 |
aacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactgtcggcaacaata |
34495979 |
T |
|
| Q |
101 |
ccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagttggaaatactattg |
200 |
Q |
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| T |
34495980 |
ccagcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtcccagttggaaatactattg |
34496079 |
T |
|
| Q |
201 |
tccttagagctagagcaatgtc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34496080 |
tccttagagctagagcaatgtc |
34496101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27607427 - 27607648
Alignment:
| Q |
1 |
aacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactgtcggcaacaata |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27607427 |
aacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactgtcggcaacaata |
27607526 |
T |
|
| Q |
101 |
ccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagttggaaatactattg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27607527 |
cctgcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtcccagttggaaatactattg |
27607626 |
T |
|
| Q |
201 |
tccttagagctagagcaatgtc |
222 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
27607627 |
tccttagagctagagctatgtc |
27607648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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