View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_468 (Length: 227)
Name: NF10829A_low_468
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_468 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 38566857 - 38567063
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
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| T |
38566857 |
atcttatctcttcaatcgttgctccatctttaccatatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
38566956 |
T |
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| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
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| T |
38566957 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataatt |
38567056 |
T |
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| Q |
221 |
gtcgact |
227 |
Q |
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| T |
38567057 |
gtcgact |
38567063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 38525732 - 38525922
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
38525732 |
atcttatttcttcaattgttgctccatctttaccatatgcaatgttatccttaatgctggatgcaaataacactggctcctggctgacaagaccaatttt |
38525831 |
T |
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| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaa |
211 |
Q |
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| T |
38525832 |
ccctctgatccacctaagctgaagttctttcatgttaattccatcgataagtacttcaccggcctgtggatcatagaatctttctaccaaa |
38525922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 51199554 - 51199513
Alignment:
| Q |
170 |
agaacttcacctgcctgtggatcatagaatctctctaccaaa |
211 |
Q |
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| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaa |
51199513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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