View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_470 (Length: 227)
Name: NF10829A_low_470
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_470 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30841488 - 30841261
Alignment:
| Q |
1 |
tgcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaactgatgagctcacacctggagagaagattgttgtgtaaca |
100 |
Q |
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| T |
30841488 |
tgcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagcttacacctggagagaagattgtagtgtaaca |
30841389 |
T |
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| Q |
101 |
agcgtgagttggaagttgcaagtatgagttagacttagaagtat-acattacttagaaaagtgaaggtagagcacttataaataaaattactcataaacc |
199 |
Q |
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| T |
30841388 |
accgtgagttggaagttgcaagtatgagttagacttagaagtataacattacttagaaaagtgaaggttgaacacttataaataagatgactcataaacc |
30841289 |
T |
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| Q |
200 |
tannnnnnnaaggttttgggtaaagatg |
227 |
Q |
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| T |
30841288 |
tatttttttaaggttttgggtaaagatg |
30841261 |
T |
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