View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_473 (Length: 226)
Name: NF10829A_low_473
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_473 |
 | |
|
| [»] scaffold0432 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 51999670 - 51999473
Alignment:
| Q |
17 |
cactctctagttttctctaggtaatacttgagaagtttcctcgggattttagtgatagcttcattactaaagggactatttctcataaacctttgttttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51999670 |
cactctctagttttctctaggtaatacttgagaagtttcctcgggattttaatgatagcttcattactaaagggactatttctcataaacctttgttttc |
51999571 |
T |
|
| Q |
117 |
tctcagtgatttctgtcggtggccagatataccaaactgatcccatgtttcttcagcactcgaccaacagaagaaaacatacattgctgatattgttc |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
51999570 |
tctcagtgatatctgtcggtggccagatataccaaactgatcccatgtttcttcagcacttgaccaacagaagaaaacatacattgctgcttttgttc |
51999473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 51999910 - 52000074
Alignment:
| Q |
26 |
gttttctctaggtaatacttgagaagtttcctcgggatttt-agtgatagcttcattactaaagggactatttctcataaacctttgttttctctcagtg |
124 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||| |||| || | || ||||||||||| || |||||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
51999910 |
gttttttctaggtaaaacttgggaagtttccataggatcttcaatgctagcttcattaatattgggactatttctcagaaaccttcgttttatctttgtg |
52000009 |
T |
|
| Q |
125 |
atttctgtcggtggccagatataccaaactg-atcccatgtttcttcagcactcgaccaacagaaga |
190 |
Q |
| |
|
| ||||||||| ||| || | ||| ||||| |||||| |||||| ||||| | |||||||| |||| |
|
|
| T |
52000010 |
acttctgtcggaggctag--aaacctaactgaatcccacgtttctgcagcagttgaccaacaaaaga |
52000074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 13723 - 13797
Alignment:
| Q |
26 |
gttttctctaggtaatacttgagaagtttcctcgggatttt-agtgatagcttcattactaaagggactatttct |
99 |
Q |
| |
|
||||||||| ||||||||||||||| || || || |||||| |||| |||||||||||| ||| ||||||||||| |
|
|
| T |
13723 |
gttttctcttggtaatacttgagaatttcccacgagattttgagtgctagcttcattaccaaaaggactatttct |
13797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 13246 - 13173
Alignment:
| Q |
26 |
gttttctctaggtaatacttgagaagtttcctcgggattttagtgatagcttcattactaaagggactatttct |
99 |
Q |
| |
|
||||||||| ||||||||||||||| || || |||||||| |||| |||| ||||||| || ||||||||||| |
|
|
| T |
13246 |
gttttctcttggtaatacttgagaatttcccacgggatttgagtgctagcatcattacccaaaggactatttct |
13173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University