View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_48 (Length: 425)
Name: NF10829A_low_48
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 14289394 - 14289800
Alignment:
| Q |
16 |
accaaacaggcccttaaatccgacttttaactaacaatacccaacacctttgatgttatcttttgtattttcctttttagataatggtctgctgttgatt |
115 |
Q |
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| T |
14289394 |
accaaacaggcccttaaatccgacttttaactaacaatgcccaacacctttgatgttatctcttgtattttcctttttagataatggtctgctgttgatt |
14289493 |
T |
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| Q |
116 |
aataaatattcattaggagcgactggaaccttcaacgacgtccagatttttgtctagatcttatacaacagatgtgaaggtgttgtacttctatctcata |
215 |
Q |
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| T |
14289494 |
aataaatattcattaggagcgactggaaccttcaacgacgtccagatttttgtctagatcttatacaacagatgtgaaggtgttgtacttctatctcata |
14289593 |
T |
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| Q |
216 |
ctttgttctttattttatttctaacg----acaagtttggttgtcatcatatgttaatatggactctaagacaatacttatctctatatgctacggtgtc |
311 |
Q |
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| T |
14289594 |
ctttgttctctattttttttctaacggacaacaagtttggttgtcatcatatgttaatatggact-taagacaatacttatctctatatgctacggtgtc |
14289692 |
T |
|
| Q |
312 |
cttctttcctaatttgtaatttgaaatttaacaaatattgtatgctaagcgatattcttttcaattcagggtcttaaagtcattggagaaatctacagtc |
411 |
Q |
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| T |
14289693 |
cttctttcctaatttgtaatttgaaatttaacaaatattgtacgctaagcgatattcttttcaattcagggtcttaaagtcattggagaaatctacagtc |
14289792 |
T |
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| Q |
412 |
gaggaacc |
419 |
Q |
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|||||||| |
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| T |
14289793 |
gaggaacc |
14289800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 15056746 - 15056684
Alignment:
| Q |
242 |
acaagtttggttgtcatcatatgttaatatggactctaagacaatacttatctctatatgcta |
304 |
Q |
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| T |
15056746 |
acaagtttggctgtcatcatatgttagtatggagtttaagacaatttttatctctatatgcta |
15056684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 14746055 - 14745955
Alignment:
| Q |
242 |
acaagtttggttgtcatcatatgttaatatggactctaagacaatacttatctctatatgctacggtgtccttctttcctaatttgtaatttgaaattta |
341 |
Q |
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| T |
14746055 |
acaagtttgcctgtcatcatatgttaaggtcgagtttaagatagtatttatctctatatgatatggtatcctacttttctaattagtaatttgaaattta |
14745956 |
T |
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| Q |
342 |
a |
342 |
Q |
| |
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| T |
14745955 |
a |
14745955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 411
Target Start/End: Complemental strand, 15056672 - 15056591
Alignment:
| Q |
331 |
tttgaaatttaacaaatattgtatgctaagcgatattcttttcaa-ttcagggtcttaaagtcattggagaaatctacagtc |
411 |
Q |
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|||||||||||| | || |||||||| ||| |||| | ||||||| |||||||| |||||| |||||||||||||| ||||| |
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| T |
15056672 |
tttgaaatttaatatatgttgtatgccaagtgatactgttttcaacttcagggttttaaaggcattggagaaatctccagtc |
15056591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 14743218 - 14743158
Alignment:
| Q |
65 |
ttgatgttatcttttgtattttcctttttagataatggtctgctgttgattaataaatatt |
125 |
Q |
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|||||||||||| |||||||| |||||||||||||| | || |||| ||||||||||||| |
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| T |
14743218 |
ttgatgttatctcttgtatttacctttttagataatcatatgatgttaattaataaatatt |
14743158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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