View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_485 (Length: 224)
Name: NF10829A_low_485
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_485 |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 23840431 - 23840619
Alignment:
| Q |
14 |
ggtttaaataaagatttatgacagctatgtaggctgtgacataacggttgcgtcagttatatctaatcgcgattctacacaatattaaggatcgcaacac |
113 |
Q |
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| T |
23840431 |
ggtttaaataaagacttgcgacagctatctagcttgtgacataatggttgcatcagttatatctaaccgcgattctacgcaatattaaggatcgcaacac |
23840530 |
T |
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| Q |
114 |
aaagacaacccgttatacgaagtacaaagactaaaaaagacact--gnnnnnnngttaccttgtcatcgatgaatttcgaccaaaatcg |
200 |
Q |
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| T |
23840531 |
gaagacaacgtgttataggaagtacatatactaaaaaaaatactaaaagaagaagttaccttgtcatcgatgaatttcgaccaaaatcg |
23840619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 23861237 - 23861270
Alignment:
| Q |
167 |
ttaccttgtcatcgatgaatttcgaccaaaatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
23861237 |
ttaccttgtcatcgatgaatttcgaccaaaatcg |
23861270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 23844033 - 23844067
Alignment:
| Q |
166 |
gttaccttgtcatcgatgaatttcgaccaaaatcg |
200 |
Q |
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| T |
23844033 |
gttaccttgtcatcgatgaattttgaccaaaatcg |
23844067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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