View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_5 (Length: 676)

Name: NF10829A_low_5
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_5
NF10829A_low_5
[»] chr3 (1 HSPs)
chr3 (8-654)||(52373458-52374104)


Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 654
Target Start/End: Complemental strand, 52374104 - 52373458
Alignment:
Q  8 caatgagcttcgagtttctgcacctaaaactgaaccatttatatgattaccattcttttccaactccacttttcttattacttcatgttttatcctcata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374104 caatgagcttcgagtttctgcacctaaaactgaaccatttatatgattaccattcttttccaactccacttttcttattacttcatgttttatcctcata 52374005  T
Q  108 acatcttttccaaacctcatctccatcaaaattttcatttttccatcaagaagcttctctttagcagcccatctttgcaatttcccagaagtagttttcg 207  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374004 acatcttttccaaacctcatctccattaaaattttcatttttccatcaagaagcttctctttagcagcccatctttgcaatttcccagaagtagttttcg 52373905  T
Q  208 gaacacattcactcttaaccaaaacaacccatccaacttctacaccctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatccc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373904 gaacacattcactcttaaccaaaacaacccatccaacttctacaccctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatccc 52373805  T
Q  308 ttcatccaaatctttttccatcctttgcatctctgcaacaattacaaccgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttggg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373804 ttcatccaaatctttttccatcctttgcatctctgcaacaattacaaccgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttggg 52373705  T
Q  408 aaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373704 aaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacc 52373605  T
Q  508 tgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373604 tgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagg 52373505  T
Q  608 gtgaccaaggtaaccagaggcattacttggagatgaaacccaaattt 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  52373504 gtgaccaaggtaaccagaggcattacttggagatgaaacccaaattt 52373458  T

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