View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_509 (Length: 217)
Name: NF10829A_low_509
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_509 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 35094700 - 35094507
Alignment:
| Q |
24 |
tcaagtacagatcaggtgctatataaaatggaagcagcatctctaaaacattactatttgtcaataacgattatcaaagtagtaaccgtcctagaataaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
35094700 |
tcaagtacagatcaggtgctatataaaatggaagcagcatctcttaaaccttactatttgtcaataacgattatcaaagtagtaactgtccttgaataaa |
35094601 |
T |
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| Q |
124 |
gcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggcaaagcctatccaataattaagtgaaaacatga |
217 |
Q |
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| T |
35094600 |
gcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggtaaagcctatccaataattaagtgaaaacatga |
35094507 |
T |
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Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 11268100 - 11267908
Alignment:
| Q |
24 |
tcaagtacagatcaggtgctatataaaatggaagcagcatctctaaaacattactatttgtcaataacgattatcaaagtagtaaccgtcctagaataaa |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| | ||||| |
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| T |
11268100 |
tcaagtacagatcaggtgctatataaaatggaagcagcatctctaaaacattactatttttcaataattattatcaat-tagtaaccgtccttgcataaa |
11268002 |
T |
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| Q |
124 |
gcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggcaaagcctatccaataattaagtgaaaacatga |
217 |
Q |
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| T |
11268001 |
gcaaatattcaaagttgatctcatagggaaaggtgactaaaggtgctgattcactcaatggcaaagcctatccaatcgttaagtgaaaacatga |
11267908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 31173326 - 31173495
Alignment:
| Q |
24 |
tcaagtacagatcaggtgctatataaaatggaagcagcatctctaaaacattactatttgtcaataacgattatcaaagtagtaaccgtcctagaataaa |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||| ||| | ||||| |
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| T |
31173326 |
tcaagtacagatcaggtgctatataaaatggaagcagcatctctaaaacattactatttttcaataatgattatc-aattagtaaccgccctcgcataaa |
31173424 |
T |
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| Q |
124 |
gcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggcaaagcctat |
194 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31173425 |
gcaaaaattcaaagttgatctcatagggaaaggtgactaaaggtgctgattcactcaattgcaaagcctat |
31173495 |
T |
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