View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_512 (Length: 217)
Name: NF10829A_low_512
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_512 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 124786 - 124570
Alignment:
| Q |
1 |
tgagatggtcatcaaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatacccaaaccacca |
100 |
Q |
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| T |
124786 |
tgagatgaccatcaaagcaactaatcataagtttaggctggtgtttaatgttgcaacaactatcgatagcatcgataaacatgacatacccaaaccacca |
124687 |
T |
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| Q |
101 |
ttctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaatcatcattcttttaattaagcttttgtttaatg |
200 |
Q |
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| T |
124686 |
ttctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaatcatcattcttttaattaagcttttgtttaatg |
124587 |
T |
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| Q |
201 |
cattttgtatttaatac |
217 |
Q |
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| T |
124586 |
cattttgtatttaatac |
124570 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 23699885 - 23699791
Alignment:
| Q |
74 |
gacaaacatgacatacccaaaccaccattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaat |
168 |
Q |
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| T |
23699885 |
gacaaacatgacatacctagaccatcattcagtttcaaggagtttgatgagatcaagaagggaatagtaaggccagatgtccttataggtaaaat |
23699791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 22079639 - 22079490
Alignment:
| Q |
14 |
aaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatacccaaaccaccattctgcttcaagg |
113 |
Q |
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| T |
22079639 |
aaagcaactgatcatccattttggttggtgtttaatggtggaacaagtgttgacaacattgacaagcatgacattcccaaaccatctttcaactttaagg |
22079540 |
T |
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| Q |
114 |
aatttgatatgataaagaagggcgtactaaggcccgatgtccttataggt |
163 |
Q |
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| T |
22079539 |
actttgatgagatcaagaagggagcactaaggccagatgtcctaataggt |
22079490 |
T |
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