View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_514 (Length: 217)
Name: NF10829A_low_514
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_514 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 31457962 - 31457784
Alignment:
| Q |
23 |
tagcggtggttcaaaaggtggtggtggaggtggcgcaaaaggaggcggcggt---ggaagcaaagggtccaccggtggcagtggtggtggggattcaatg |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31457962 |
tagcggtggtgcaaaaggtggtggtggaggtggcgcaaaaggaggcggtggtaccggaagcaaagggtccaccggtggcagtggtggtggggattcaatg |
31457863 |
T |
|
| Q |
120 |
aaagcaccgggagatggtggatcatacatatctcgtggtgcatttgaaaacaaccctcaaggctattttagtggtcttc |
198 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31457862 |
aaagcacctggaggtggtggatcatacatatctcgtggtgcatttgaaaacaaccctcaaggctattttagtggtcttc |
31457784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 49085892 - 49085733
Alignment:
| Q |
39 |
ggtggtggtggaggtggcgcaaaaggaggcggcggtggaagcaaagggtccaccggtggcagtggtggtggggattcaatgaaagcaccgggagatggtg |
138 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
49085892 |
ggtggtggaggaggtggcacaaaaggaggcggtggtggaagcaaagggtccaccggtggcagtggtggtggagattcaatgaaagcaccgggaggtggtg |
49085793 |
T |
|
| Q |
139 |
gatcatacatatctcgtggtgcatttgaaaacaaccctcaaggctattttagtggtcttc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
49085792 |
gatcatacatatctcgtggtgcatttgaaagcaacccacaaggctattttggtggtcttc |
49085733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University