View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_516 (Length: 216)
Name: NF10829A_low_516
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_516 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 2442696 - 2442889
Alignment:
| Q |
23 |
gaccgaactctagcttctctttttgcaaccattttcagactatcttgctctgcatgcgatagaatgatacaaaatttctagaattgcgttgtaaaatggt |
122 |
Q |
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| T |
2442696 |
gaccgaactctagcttctctttttgcaaccattttcagactatcttgctctgcgtgcgatagaatgatacaaaatttgtataaattgattgtaaaatggt |
2442795 |
T |
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| Q |
123 |
aatatagaggagccctcgatcaatttctggtaaacagtgtcagtgagatgaacttgaaacaaaaacaaggttaacaaactcatatacaaatatt |
216 |
Q |
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| T |
2442796 |
aatataaagaagccctcgatcaatttctggtaaacagtgttagtgtgatgaacttgaaacaaaaacaaggttaacaaactcatatacaaatatt |
2442889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 50984328 - 50984196
Alignment:
| Q |
60 |
gactatcttgctctgcatgcgatagaatgatacaaaatttctagaattgcgttgtaaaatggtaatatagaggagccctcgatcaatttctggtaa--ac |
157 |
Q |
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| T |
50984328 |
gactatcttgctctgcatgtgacagattaaaacaaaatttgtagaattga-ttg-aaaatggtaatatagagaagccctcaatcaatttctagaaaacac |
50984231 |
T |
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| Q |
158 |
agtgtcagtgagatgaacttgaaacaaaaacaagg |
192 |
Q |
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| T |
50984230 |
agtttcagtgagatgaagttgaaacaaaatcaagg |
50984196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 34019952 - 34019916
Alignment:
| Q |
36 |
cttctctttttgcaaccattttcagactatcttgctc |
72 |
Q |
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| T |
34019952 |
cttctctttttgcaaccattttcagactatcttgctc |
34019916 |
T |
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