View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_517 (Length: 216)

Name: NF10829A_low_517
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_517
NF10829A_low_517
[»] chr6 (9 HSPs)
chr6 (20-197)||(28097221-28097398)
chr6 (70-185)||(29827263-29827378)
chr6 (19-98)||(28186620-28186699)
chr6 (19-95)||(28326704-28326780)
chr6 (19-95)||(28504340-28504416)
chr6 (19-98)||(28296617-28296696)
chr6 (19-98)||(28515377-28515456)
chr6 (52-182)||(27697379-27697509)
chr6 (70-182)||(29842785-29842897)
[»] chr2 (1 HSPs)
chr2 (19-182)||(3280885-3281048)
[»] chr5 (1 HSPs)
chr5 (19-197)||(16692093-16692271)
[»] scaffold0019 (1 HSPs)
scaffold0019 (34-197)||(57072-57235)
[»] chr8 (1 HSPs)
chr8 (61-197)||(31906322-31906458)
[»] chr4 (1 HSPs)
chr4 (18-153)||(5089772-5089907)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 28097398 - 28097221
Alignment:
Q  20 taaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatga 119  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097398 taaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatga 28097299  T
Q  120 aagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097298 aagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 28097221  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 29827263 - 29827378
Alignment:
Q  70 ttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatg 169  Q
    |||| ||||||| |||||||||||||||| ||| | || ||| |||||||||| ||||||| | ||||||| ||||| ||||||    | ||||||||||    
T  29827263 ttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaagagatccaaaatatacttaaaataagttttgatg 29827362  T
Q  170 ctttggaggaagatga 185  Q
    ||||||||||||||||    
T  29827363 ctttggaggaagatga 29827378  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 28186620 - 28186699
Alignment:
Q  19 gtaaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 98  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| |||||||||    
T  28186620 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataggagaatggaa 28186699  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 28326704 - 28326780
Alignment:
Q  19 gtaaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 95  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28326704 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28326780  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 28504340 - 28504416
Alignment:
Q  19 gtaaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 95  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28504340 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28504416  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 28296696 - 28296617
Alignment:
Q  19 gtaaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 98  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28296696 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28296617  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 28515377 - 28515456
Alignment:
Q  19 gtaaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 98  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28515377 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28515456  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 27697509 - 27697379
Alignment:
Q  52 gaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatac 151  Q
    |||||| | ||||| ||||||| ||||||| | |||||||||||||| | | | || ||| | ||||| || ||||| | | ||||||| ||||| ||||    
T  27697509 gaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacaggattcccaataaagagatccaaaagatac 27697410  T
Q  152 ttcgtgtgagttttgatgctttggaggaaga 182  Q
    || | ||||| | |||||||||||| |||||    
T  27697409 ttagagtgagctatgatgctttggaagaaga 27697379  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 29842897 - 29842785
Alignment:
Q  70 ttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatg 169  Q
    |||| ||||||| |||||||||||||||| |||   || ||| | |||||||| ||||||| | ||||||| || || ||||||    | || |||||||    
T  29842897 ttgtttggaaagaatatagaagaatggaaatctacattagataggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgatg 29842798  T
Q  170 ctttggaggaaga 182  Q
    |||||||||||||    
T  29842797 ctttggaggaaga 29842785  T

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Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 3280885 - 3281048
Alignment:
Q  19 gtaaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatg 118  Q
    ||||||||| || |||||||||||||||| || ||| |||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||    
T  3280885 gtaaattatgcttctggccttccattggcattagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgatatg 3280984  T
Q  119 aaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaaga 182  Q
    |||| ||||||| | |||||||||| || ||||||   ||||||||||||||||||||||||||    
T  3280985 aaaggattcctaataaagagattcagaagatacttaaagtgagttttgatgctttggaggaaga 3281048  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 16692093 - 16692271
Alignment:
Q  19 gtaaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatg 118  Q
    |||| |||| || ||||||||||||| || || ||| || |||| || ||||||| ||||||| |||||||||||||||| |||   || ||||||||||    
T  16692093 gtaacttatgcttctggccttccattagctttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatg 16692192  T
Q  119 aaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 197  Q
    || | |||||| || ||   ||||| |||||||||   || |||||||||  ||||||||||||||| | |||||||||    
T  16692193 aatggattcctggtaaacgaattcacaaaatacttaaagtaagttttgatagtttggaggaagatgaaaagagtgtttt 16692271  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 57235 - 57072
Alignment:
Q  34 ggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtg 133  Q
    ||||||||||||||||| ||| || | ||||| ||||||| ||||||| |||||| ||||||||| |||   ||  |||  |||||||| ||||| | |     
T  57235 ggccttccattggccttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccatta 57136  T
Q  134 aagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 197  Q
    || |||| ||| | ||||||   || || ||||||||||||||||||||||||| || ||||||    
T  57135 aaaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttt 57072  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 31906322 - 31906458
Alignment:
Q  61 ggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtga 160  Q
    |||||||| || | ||||||| ||||| |||||||| | |||   ||  ||||||||||||  ||||| | | ||||||| ||||| |||||    || |    
T  31906322 ggttccaatttatttggaaagaatatacaagaatgggaatctgcattacatcgatatgaaatcattccaaataaagagatccaaaatatactcaaagtaa 31906421  T
Q  161 gttttgatgctttggaggaagatgagaggagtgtttt 197  Q
    |||||||||||||||||||||||||||  ||||||||    
T  31906422 gttttgatgctttggaggaagatgagaaaagtgtttt 31906458  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 5089907 - 5089772
Alignment:
Q  18 ggtaaattatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatat 117  Q
    ||||| |||| || |||||||||||||||| || ||| |  | |||||||| |||| ||||||| |||||||| ||||||| |||||  | |||   |||    
T  5089907 ggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatctttactagatgagtat 5089808  T
Q  118 gaaagaattcctagtgaagagattcaaaaaatactt 153  Q
    ||||| ||||||| | |||| || ||||| ||||||    
T  5089807 gaaaggattcctaataaagaaatccaaaagatactt 5089772  T

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