View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_523 (Length: 215)
Name: NF10829A_low_523
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_523 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 46844888 - 46844684
Alignment:
| Q |
9 |
agcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844888 |
agcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggt |
46844789 |
T |
|
| Q |
109 |
ggaattatgtcacatactcaatcatcgttagcttccaatttaggcatcttttgtgttatataggcatcacgtcctccaacaacatcctctggtcacggca |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844788 |
ggaattatgtcacatactcaatcatccttagcttccaatttaggcatc--ttgtgctatataggcatcacgtcctccaacaacatcctctggtcacggca |
46844691 |
T |
|
| Q |
209 |
ttcatgg |
215 |
Q |
| |
|
||||||| |
|
|
| T |
46844690 |
ttcatgg |
46844684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University