View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_538 (Length: 211)

Name: NF10829A_low_538
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_538
NF10829A_low_538
[»] chr2 (3 HSPs)
chr2 (9-211)||(4111557-4111759)
chr2 (57-211)||(27556087-27556244)
chr2 (59-211)||(28579975-28580128)
[»] chr3 (2 HSPs)
chr3 (57-204)||(5699611-5699760)
chr3 (57-153)||(6075476-6075575)
[»] chr7 (2 HSPs)
chr7 (57-199)||(11898102-11898246)
chr7 (59-211)||(5712861-5713014)
[»] chr8 (2 HSPs)
chr8 (54-183)||(15663234-15663366)
chr8 (59-197)||(15551149-15551290)
[»] chr4 (3 HSPs)
chr4 (59-153)||(18448525-18448622)
chr4 (57-140)||(11476179-11476263)
chr4 (54-204)||(20880795-20880945)
[»] chr5 (1 HSPs)
chr5 (67-141)||(19079994-19080069)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 4111759 - 4111557
Alignment:
Q  9 aacaaagagaggatgaaagtcatcttgctgcttgccttcactttgcactgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatt 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4111759 aacaaagagaggatgaaagtcatcttgctccttgccttcaccttgcacggtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatt 4111660  T
Q  109 tcaaaaggttcaagatgttacgtcatcattttcaaaaacatgcatcattcagatttataaaatctcgcagcggaatacaaacaatatctcatatatatca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4111659 tcaaaaggttcaagatgttacgtcatcattttcaaaaacatgcataattcggatttataaaatctcgcagcggaatacaaacaatatcttatatatatca 4111560  T
Q  209 gat 211  Q
    |||    
T  4111559 gat 4111557  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 27556087 - 27556244
Alignment:
Q  57 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattttc--aaaaacatgcat 153  Q
    ||||||| ||||| |||||| || ||||| | ||||||| ||||  |||   ||||||| ||||||||||| ||||||| ||||||  ||||||||||||    
T  27556087 tgtaacacccttgtaccccagaagcaataattaatgcaactaaatcatttaatcaaaagagttcaagatgtcacgtcataattttctcaaaaacatgcat 27556186  T
Q  154 cattcagattt-ataaaatctcgcagcggaatacaaacaatatctcatatatatcagat 211  Q
     |||| | ||| |||||| |||||||||||||| |||||| |||||| |||| ||||||    
T  27556187 aattcggttttcataaaa-ctcgcagcggaataaaaacaacatctcaaatatctcagat 27556244  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 28580128 - 28579975
Alignment:
Q  59 taacatccttgaaccccacaaacaatattaaatgcaaataaa-caattatttcaaaaggttcaagatgttacgtcatcattttc-aaaaacatgcatcat 156  Q
    ||||| |||||||||||| ||  |||||| |||||||||||| || ||| || |||  |||||||||| |||||||||||||||  ||||||||||| ||    
T  28580128 taacacccttgaaccccaaaagtaatatttaatgcaaataaatcatttaatt-aaagagttcaagatgatacgtcatcattttcttaaaacatgcataat 28580030  T
Q  157 tcagatttataaaatctcgcagcggaatacaaacaatatctcatatatatcagat 211  Q
    |  | |||   |||||||||| || |||| |||||  |||||| |||| ||||||    
T  28580029 ttggttttcataaatctcgcaacgaaataaaaacagcatctcaaatatctcagat 28579975  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 5699760 - 5699611
Alignment:
Q  57 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaaggttcaagatgttacgtcatcattttc-aaaaacatgcatca 155  Q
    |||||||||||||||||| |||||||||||| |||||||||||||| |||||||| || |||||||||| |||  ||||||||||  ||||||||||| |    
T  5699760 tgtaacatccttgaaccctacaaacaatatttaatgcaaataaacagttatttcataatgttcaagatgctactccatcattttctcaaaacatgcataa 5699661  T
Q  156 ttcagattt-ataaaatctcgcagcggaatacaaacaatatctcatatat 204  Q
    ||  ||||| |||||| || | ||||||||| |||||| |||||| ||||    
T  5699660 tttggatttcataaaaacttgtagcggaataaaaacaacatctcaaatat 5699611  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 6075476 - 6075575
Alignment:
Q  57 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaa-caattatttcaaaaggttcaagatgttacgtcatcattt--tcaaaaacatgcat 153  Q
    ||||||| | |||||||||||||| |||||| |||||||||||| || ||| || |||   ||||||||||||||| |||||||  ||||||||||||||    
T  6075476 tgtaacaccgttgaaccccacaaaaaatatttaatgcaaataaatcatttaattaaaagaattcaagatgttacgttatcattttctcaaaaacatgcat 6075575  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 11898102 - 11898246
Alignment:
Q  57 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaagg-ttcaagatgttacgtcatcattt-tcaaaaacatgcatc 154  Q
    ||||||| |||||||||||||||  |||||| ||||| ||||||||||||||| |||||| ||||||||||||||| ||||    |||||||||||||      
T  11898102 tgtaacacccttgaaccccacaagaaatatttaatgctaataaacaattatttaaaaaggattcaagatgttacgttatcaaaactcaaaaacatgcaga 11898201  T
Q  155 attcagattt-ataaaatctcgcagcggaatacaaacaatatctca 199  Q
    |||||| ||| |||||| |||||||||||||| |||||||||||||    
T  11898202 attcagttttcataaaa-ctcgcagcggaataaaaacaatatctca 11898246  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 5713014 - 5712861
Alignment:
Q  59 taacatccttgaaccccacaaacaatattaaatgcaaataaa-caattatttcaaaag-gttcaagatgttacgtcatcattttc-aaaaacatgcatca 155  Q
    ||||| ||||||||||||||| ||||||| |||||||||||| |||||| ||||||||  |||||||||||| ||| ||||||||  ||||||||||| |    
T  5713014 taacacccttgaaccccacaagcaatatttaatgcaaataaatcaatta-ttcaaaagaattcaagatgttatgtcttcattttctcaaaacatgcataa 5712916  T
Q  156 ttcagattt-ataaaatctcgcagcggaatacaaacaatatctcatatatatcagat 211  Q
    ||||| ||| |||||| |||| |||| |||| |||||| |||||| |||| ||||||    
T  5712915 ttcagttttcataaaa-ctcgtagcgaaata-aaacaacatctcaaatatctcagat 5712861  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 15663366 - 15663234
Alignment:
Q  54 cactgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattt--tcaaaaacatg 150  Q
    |||| ||||| |||||||||| |||||||||||| ||||||||||||   ||   ||||||| ||| ||||||||||||||||||||  |||||||||||    
T  15663366 cactataacacccttgaaccctacaaacaatatttaatgcaaataaatcgtttaatcaaaagagtttaagatgttacgtcatcattttctcaaaaacatg 15663267  T
Q  151 catcattcag-atttataaaatctcgcagcggaa 183  Q
    ||| ||||||  ||||||||| ||||||||||||    
T  15663266 cataattcagtttttataaaa-ctcgcagcggaa 15663234  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 15551290 - 15551149
Alignment:
Q  59 taacatccttgaacccc-acaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattttc-aaaaacatgcatca 155  Q
    ||||| ||||||||||| |||| ||||||| ||||||||||||  |||   ||||||| ||||||||||||||||||||||||||  ||||||||||| |    
T  15551290 taacacccttgaacccccacaagcaatatttaatgcaaataaatcatttaatcaaaagagttcaagatgttacgtcatcattttctcaaaacatgcataa 15551191  T
Q  156 ttcagattt-ataaaatctcgcagcggaatacaaacaatatct 197  Q
    | | | ||| |||||| |||| ||||||||| |||||||||||    
T  15551190 tcctgttttcataaaa-ctcgtagcggaataaaaacaatatct 15551149  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 18448525 - 18448622
Alignment:
Q  59 taacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattt--tcaaaaacatgcat 153  Q
    ||||| ||||||||||||||| || |||| ||||||||||||  |||   ||||||| |||||||||| |||||||||||||  ||||||||||||||    
T  18448525 taacacccttgaaccccacaagcagtatttaatgcaaataaatcatttaatcaaaagagttcaagatgctacgtcatcattttctcaaaaacatgcat 18448622  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 11476179 - 11476263
Alignment:
Q  57 tgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcatttt 140  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||  ||    ||||||| ||||||||||| |||||||||||||    
T  11476179 tgtaacacccttgaactccacaaacaatatttaatgcaaataaatcatctaatcaaaagagttcaagatgtcacgtcatcatttt 11476263  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 20880795 - 20880945
Alignment:
Q  54 cactgtaacatccttgaaccccacaaacaatattaaatgcaaataaacaattatttcaaaag-gttcaagatgttacgtcatcattttcaaaaacatgca 152  Q
    |||||||||| |||||||||||||||  |||||  ||||||||||||  |||   |||||||  ||||||| ||||||||||  || |||||||||||||    
T  20880795 cactgtaacacccttgaaccccacaagaaatatgtaatgcaaataaatcatttaatcaaaagaattcaagacgttacgtcat-tttctcaaaaacatgca 20880893  T
Q  153 tcattcagatttataaaatctcgcagcggaatacaaacaatatctcatatat 204  Q
    | |||| | |||   |||||| ||| ||||||| |||||| |||||| ||||    
T  20880894 taattcggttttcataaatcttgcatcggaataaaaacaacatctcaaatat 20880945  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 19080069 - 19079994
Alignment:
Q  67 ttgaaccccacaaacaatattaaatgcaaataaa-caattatttcaaaag-gttcaagatgttacgtcatcattttc 141  Q
    |||||||||||||| |||||| |||||||||  | |||||| | |||||| |||||||||||||| |||||||||||    
T  19080069 ttgaaccccacaaataatatttaatgcaaattcatcaattaat-caaaagagttcaagatgttacatcatcattttc 19079994  T

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