View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_539 (Length: 211)
Name: NF10829A_low_539
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_539 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 341211 - 341421
Alignment:
| Q |
1 |
gcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341211 |
gcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaa |
341310 |
T |
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| Q |
101 |
tgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341311 |
tgactgaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgc |
341410 |
T |
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| Q |
201 |
tgaaagtgatg |
211 |
Q |
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||||||||||| |
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| T |
341411 |
tgaaagtgatg |
341421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 332919 - 333127
Alignment:
| Q |
1 |
gcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaa |
100 |
Q |
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|||||||||||||| ||||| | ||||||||||||||||| |||||| ||||||||| |||| |||||| ||||||||||| || |||||||| |||| |
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| T |
332919 |
gcttttaaccaagctgaagaatgcatcttctatagacacatcgtgcccgtttgtgtttagaagatgcaaaaatggcttcaaattggggaagagaaaaaaa |
333018 |
T |
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| Q |
101 |
tgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgc |
200 |
Q |
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| T |
333019 |
tgaccgaggcatgcaaagtatttgataaattcctattttcgtgtatagcttcaaagcgcgaagagctaaagcaaaattgtaacaaaaatgaaatcaatgt |
333118 |
T |
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| Q |
201 |
tgaaagtga |
209 |
Q |
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| T |
333119 |
tgaaagtga |
333127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 337173 - 337371
Alignment:
| Q |
1 |
gcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaa |
100 |
Q |
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|||||||||||||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
337173 |
gcttttaaccaagctgaagaatccatcttctacagacacactgtgccggcttgtgtttggaagttgcaaagttggcttcaaatcggtgaagagaaaaaaa |
337272 |
T |
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| Q |
101 |
tgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatg |
199 |
Q |
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| T |
337273 |
tgactgaagcatgcaaagtatttgatcaattcctatattcgtgtatagcttcaaaatgcgaagagctaaagaaaaacggtaacaaaaatgaaattaatg |
337371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 347542 - 347412
Alignment:
| Q |
1 |
gcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaa |
100 |
Q |
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|||||||||||| ||||||| ||| ||||||||||| | ||||| | |||||||||||||||||| ||||||||||| || |||||||| |||| |
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| T |
347542 |
gcttttaaccaaattgaagagtgcatattctatagacatatagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaagagaaaaaaa |
347443 |
T |
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| Q |
101 |
tgacagaggcatgcaaggtatttgatcaatt |
131 |
Q |
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|||| | |||||||| |||||||||||||| |
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| T |
347442 |
tgaccaaagcatgcaaagtatttgatcaatt |
347412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 356149 - 356086
Alignment:
| Q |
53 |
gtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaatgacagaggcatgcaa |
116 |
Q |
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|||||||||||||||||| ||||||||||| || |||||||| || ||||| |||||||||| |
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| T |
356149 |
gtgtttggaagttgcaaaaatggcttcaaattggtgaagagaaaaatatgaccaaggcatgcaa |
356086 |
T |
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