View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_54 (Length: 421)
Name: NF10829A_low_54
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 35096355 - 35095963
Alignment:
| Q |
19 |
acttagttttgtttacgggataatggtttgaatgaaaggtgtactttggagaaaattactacactaaaatcattatttcttctt-acactaacggaaaag |
117 |
Q |
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| T |
35096355 |
acttagttttgtttacgggatagtggtttgaatgaaaggtgtactttggagaaaattactacactaaaatcattatttcttctttacactaacggaaaag |
35096256 |
T |
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| Q |
118 |
attaacactatgtatctgtctatccgcattttcagtatgtattatattgattttaatttaagttgcttgttttaatgtctatccccaggaaacattggtt |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35096255 |
attaacactatgtatctgtctatccgcatattcagtatgtattatattgattttaatttaagttgcttgttttaatgtctatcctcaggaaacattggtt |
35096156 |
T |
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| Q |
218 |
tggaaaaatgactaaaattttgtaattagttttttagtttcttaaattatggtgcatatttcaatttgaataaaattgaattgtctgggatgctttgctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35096155 |
tggaaaaatgactaaaattttgtaattagttttttagtttcttaaattat-gtgcatatttcaatttgaataaaattgaattgtctgggatgctttgctc |
35096057 |
T |
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| Q |
318 |
agaacttgtgttttggttcatctttatttgcttaattatcgggagctatgaatgcaattgagatagcttacaacaaaggctggactaatctatg |
411 |
Q |
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| T |
35096056 |
agaacttgtgttttggttcatctttatttgcttaattatcgggagctatgaatgcaattgagatagcttacaataaaggctggactaatctatg |
35095963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 20692541 - 20692609
Alignment:
| Q |
332 |
ggttcatctttatttgcttaattatcgggagctatgaatgcaattgagatagcttacaacaaaggctgg |
400 |
Q |
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| T |
20692541 |
ggttcatctttatttgctgaattatcaggtgctatgcaggctattgagatagcacacaacaaaggctgg |
20692609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 11036704 - 11036764
Alignment:
| Q |
333 |
gttcatctttatttgcttaattatcgggagctatgaatgcaattgagatagcttacaacaa |
393 |
Q |
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| T |
11036704 |
gttcatcttaatttgttgaattatcaggtgctatgcatgcaattgagatagcacacaacaa |
11036764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 2813757 - 2813791
Alignment:
| Q |
237 |
ttgtaattagttttttagtttcttaaattatggtg |
271 |
Q |
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| T |
2813757 |
ttgtaattagttttttagttccttaaattatggtg |
2813791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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