View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_545 (Length: 209)

Name: NF10829A_low_545
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_545
NF10829A_low_545
[»] chr1 (8 HSPs)
chr1 (38-209)||(17560737-17560908)
chr1 (54-205)||(4366475-4366626)
chr1 (75-202)||(21855384-21855511)
chr1 (62-195)||(39379049-39379182)
chr1 (64-192)||(4570879-4571007)
chr1 (75-203)||(10218926-10219054)
chr1 (53-139)||(4014944-4015030)
chr1 (94-202)||(4016792-4016900)
[»] chr7 (17 HSPs)
chr7 (53-204)||(29874450-29874602)
chr7 (62-203)||(29859395-29859536)
chr7 (53-206)||(29921972-29922125)
chr7 (53-195)||(29867188-29867327)
chr7 (53-195)||(29881205-29881347)
chr7 (60-175)||(29454089-29454204)
chr7 (94-192)||(29445676-29445774)
chr7 (53-144)||(29430980-29431071)
chr7 (60-144)||(14076678-14076762)
chr7 (60-144)||(14386706-14386790)
chr7 (60-139)||(660833-660912)
chr7 (52-120)||(19351047-19351115)
chr7 (94-145)||(29106813-29106864)
chr7 (94-145)||(29899373-29899424)
chr7 (83-192)||(29895418-29895530)
chr7 (98-207)||(29920067-29920176)
chr7 (60-120)||(18514773-18514833)
[»] chr4 (8 HSPs)
chr4 (63-195)||(3557675-3557807)
chr4 (63-202)||(3565686-3565825)
chr4 (53-195)||(3560937-3561079)
chr4 (62-208)||(1686273-1686419)
chr4 (74-144)||(53774840-53774910)
chr4 (60-144)||(11970968-11971052)
chr4 (75-136)||(53430100-53430161)
chr4 (55-144)||(11981664-11981753)
[»] chr3 (1 HSPs)
chr3 (53-208)||(3625670-3625825)
[»] chr5 (2 HSPs)
chr5 (75-202)||(24330900-24331027)
chr5 (76-205)||(29597554-29597683)
[»] chr2 (1 HSPs)
chr2 (53-120)||(14514924-14514991)
[»] chr6 (3 HSPs)
chr6 (73-144)||(6921349-6921420)
chr6 (62-139)||(6935206-6935283)
chr6 (60-144)||(20770650-20770734)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 17560737 - 17560908
Alignment:
Q  38 ataaccatcatagctataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatata 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  17560737 ataaccatcatagctataatcaatttgaagatcgttataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatata 17560836  T
Q  138 accaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatg 209  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17560837 accaaatcgatttccttgtaacaataagaaaaacaaagacagtcccccaacacaccaaaagttggttctatg 17560908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 4366475 - 4366626
Alignment:
Q  54 taatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcct 153  Q
    ||||| ||||||||||  |  ||||||| | |||| |||||||||||||| ||||||||||| ||||||||||  ||||||| ||| |||||  ||| ||    
T  4366475 taatctatttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttct 4366574  T
Q  154 tgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttc 205  Q
    |||||  ||||||||||||||| |||||||||||||||||||  ||||||||    
T  4366575 tgtaagaataagaaaaacaaaggcagtcccccaacacaccaactgttggttc 4366626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 21855384 - 21855511
Alignment:
Q  75 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 174  Q
    ||||||| | |||||| | ||||||||||||||||||||||||||| |||||  | ||||||||| |||||| ||||||||||   ||| ||||||||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaa 21855483  T
Q  175 gacagtcccccaacacaccaatagttgg 202  Q
    ||||| ||| ||| ||||||||||||||    
T  21855484 gacagcccctcaatacaccaatagttgg 21855511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 39379049 - 39379182
Alignment:
Q  62 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 161  Q
    ||||||||| | |||||| ||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||  |||   |||||| |    
T  39379049 ttgaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagtttttctgtaacaa 39379148  T
Q  162 taagaaaaacaaagacagtcccccaacacaccaa 195  Q
    |||||||||||||||||||| |||||||||||||    
T  39379149 taagaaaaacaaagacagtcacccaacacaccaa 39379182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 4571007 - 4570879
Alignment:
Q  64 gaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgata 163  Q
    |||||||  ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||  ||||| |||    |||    
T  4571007 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 4570908  T
Q  164 agaaaaacaaagacagtcccccaacacac 192  Q
    |||||||||||| ||| | ||||||||||    
T  4570907 agaaaaacaaaggcagcctcccaacacac 4570879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 10219054 - 10218926
Alignment:
Q  75 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 174  Q
    ||||||||| |||| ||| |||||||||||||||||| ||||||||||||||  ||||||| ||| |||||  |||||||||    | ||||||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttgtgcaaaaaagaaaaacaaa 10218955  T
Q  175 gacagtcccccaacacaccaatagttggt 203  Q
    | ||  |||||||||||||||||||||||    
T  10218954 ggcaaccccccaacacaccaatagttggt 10218926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 4014944 - 4015030
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 139  Q
    |||||| ||| ||||||| |  ||||||| | |||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  4014944 ataatctattagaagatcatggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataac 4015030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 4016792 - 4016900
Alignment:
Q  94 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacacc 193  Q
    ||||||| ||||||||||| |||||||||||||  ||||| |||   |||| | ||| | | ||   ||||||||||||||| ||| ||||||||||||     
T  4016792 gagtccaggaatcttcaactccaaatttcttcatctgccagatacagaaattggtttgcctataggaataagaaaaacaaaggcagccccccaacacact 4016891  T
Q  194 aatagttgg 202  Q
    |||||||||    
T  4016892 aatagttgg 4016900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 29874602 - 29874450
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 152  Q
    |||||||||||||||||  | |||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||||  |||||  |||||    
T  29874602 ataatcaatttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagtttcc 29874503  T
Q  153 ttgtaacgataagaaaaacaaagacagtc-ccccaacacaccaatagttggtt 204  Q
    ||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||    
T  29874502 ttgtaacaataagaaaaacaaagacagtcgccccaacacacctatatttggtt 29874450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 29859536 - 29859395
Alignment:
Q  62 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 161  Q
    |||||||| || |||||||||| |||| ||||| ||||||||||||||||| |||||||||||||  | ||||||||| |||||  |||||||||||| |    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaacaa 29859437  T
Q  162 taagaaaaacaaagacagtcccccaacacaccaatagttggt 203  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  29859436 taagaaaaacaaagatggtcccccaacacaccaatagttggt 29859395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 29921972 - 29922125
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 152  Q
    |||||| ||| ||||||  | ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||  ||||||||||| |||||  ||||     
T  29921972 ataatctattagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttct 29922071  T
Q  153 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttct 206  Q
    ||||||  ||||||||||||||| ||| |||||||||||||||  |||||||||    
T  29922072 ttgtaagcataagaaaaacaaaggcagccccccaacacaccaacggttggttct 29922125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 29867327 - 29867188
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 152  Q
    |||||||||||||||||  |  |||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||||  |||||  |||||    
T  29867327 ataatcaatttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttcc 29867228  T
Q  153 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaa 195  Q
    ||   |  ||||||||||||||| |||||||||||||||||||    
T  29867227 tt---agaataagaaaaacaaaggcagtcccccaacacaccaa 29867188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 29881347 - 29881205
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 152  Q
    ||||||||||||||||   |  |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| | ||  |||||  |||||    
T  29881347 ataatcaatttgaagactatggtaactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagtttcc 29881248  T
Q  153 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaa 195  Q
    ||||||| |||| |||| ||||| |||||| ||||||||||||    
T  29881247 ttgtaacaataacaaaagcaaaggcagtcctccaacacaccaa 29881205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 29454089 - 29454204
Alignment:
Q  60 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaac 159  Q
    ||||||||||| | |||||||||| ||| |||| ||||||||||||||||||| ||||||||| |||   |||||||||| ||||||  ||||||||||     
T  29454089 atttgaagatcttgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttgtaag 29454188  T
Q  160 gataagaaaaacaaag 175  Q
     |||||||||||||||    
T  29454189 aataagaaaaacaaag 29454204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 29445676 - 29445774
Alignment:
Q  94 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacac 192  Q
    |||||||||| ||||||||||| |||| |||||  ||||||||||  |||||| |||||||||||  ||||||| |||||||  || ||||||||||||    
T  29445676 gagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataagaacaacaaaggaagccccccaacacac 29445774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 29430980 - 29431071
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 144  Q
    |||||| ||||||||||| | |||||||||| |||||||| | ||||||||||||| | ||||||||||| |||   |||||||||| ||||    
T  29430980 ataatctatttgaagatcctgataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaat 29431071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 14076762 - 14076678
Alignment:
Q  60 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 144  Q
    ||||||||||  | |||||||||| |||| ||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  14076762 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14076678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 14386790 - 14386706
Alignment:
Q  60 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 144  Q
    ||||||||||  | |||||||||| |||| ||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  14386790 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 660833 - 660912
Alignment:
Q  60 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 139  Q
    ||||||||||  | |||||||||| |||||||| |||||||||| |||||||| | ||||| |||||  |||||||||||    
T  660833 atttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataac 660912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 19351047 - 19351115
Alignment:
Q  52 tataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatt 120  Q
    |||||||||| |||||||| | | |||||||| | ||||||||||||||||| || ||||| |||||||    
T  19351047 tataatcaatgtgaagatcctgaaaactaattttgaggaatggagtccaagactcctcaactccaaatt 19351115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 29106864 - 29106813
Alignment:
Q  94 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatc 145  Q
    |||||||||| ||||||||||||||||||||||  ||||||| ||| |||||    
T  29106864 gagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaatc 29106813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 29899424 - 29899373
Alignment:
Q  94 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatc 145  Q
    ||||||| || ||||||||||||||||||||||  ||||||||||| |||||    
T  29899424 gagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaatc 29899373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 29895530 - 29895418
Alignment:
Q  83 tctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgt---aacgataagaaaaacaaagacag 179  Q
    |||||| ||| || ||||||| ||||| | ||||||||||||||  ||||||| ||| || ||| |||||||||   ||  |||||||||||||||||||    
T  29895530 tctaagtaattgactccaagactcttctatcccaaatttcttcatctgccataaaacaaattcgttttccttgtcagaagaataagaaaaacaaagacag 29895431  T
Q  180 tcccccaacacac 192  Q
     | ||||| ||||    
T  29895430 ccacccaagacac 29895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 29920067 - 29920176
Alignment:
Q  98 ccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacaccaata 197  Q
    |||||||| |||||  || ||||||||||  | |||||| |  || ||| |||||||||||  ||||||| || |||| ||| | ||||||||||||| |    
T  29920067 ccaagaatattcaagtccgaatttcttcatcttccatattataaattcggtttccttgtaagaataagaagaaaaaaggcagcctcccaacacaccaaga 29920166  T
Q  198 gttggttcta 207  Q
    ||||||||||    
T  29920167 gttggttcta 29920176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 18514773 - 18514833
Alignment:
Q  60 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatt 120  Q
    ||||||||||   ||||||||||| |||||||| |||||||||| | |||||| |||||||    
T  18514773 atttgaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaatt 18514833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 3557807 - 3557675
Alignment:
Q  63 tgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgat 162  Q
    |||||||| | |||||||||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||| |||||||||||  ||    
T  3557807 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgtaagaat 3557708  T
Q  163 aagaaaaacaaagacagtcccccaacacaccaa 195  Q
    ||||||||||||||||||||| |||||||||||    
T  3557707 aagaaaaacaaagacagtccctcaacacaccaa 3557675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 3565825 - 3565686
Alignment:
Q  63 tgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgat 162  Q
    |||||||| | |||||||||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||| ||| ||| |||| ||    
T  3565825 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaat 3565726  T
Q  163 aagaaaaacaaagacagtcccccaacacaccaatagttgg 202  Q
    ||||||||||||| ||||||| ||||||||||| ||||||    
T  3565725 aagaaaaacaaaggcagtccctcaacacaccaacagttgg 3565686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 3560937 - 3561079
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 152  Q
    |||||| | ||||||||| | |||||||||| |||| ||| |||||||||| ||||||||||||||||| ||||  ||||| ||||  |||||| |||||    
T  3560937 ataatctaattgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttcc 3561036  T
Q  153 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaa 195  Q
    ||||||  ||||||||||||||| || |||||||| |||||||    
T  3561037 ttgtaagaataagaaaaacaaaggcaatcccccaagacaccaa 3561079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 1686273 - 1686419
Alignment:
Q  62 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 161  Q
    ||||||||| | |||||||  | |||| ||| |||||||||| || ||||| ||||||| |||||  ||||||||||  | || | |   ||| |||  |    
T  1686273 ttgaagatcataataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataataagattggtcctcttataagaa 1686372  T
Q  162 taagaaaaacaaagacagtcccccaacacaccaatagttggttctat 208  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||    
T  1686373 taagaaaaacaaaggcagtcccccaacacaccaacagttggctctat 1686419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 53774910 - 53774840
Alignment:
Q  74 ataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 144  Q
    |||||||||| |||||||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  53774910 ataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaat 53774840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 11970968 - 11971052
Alignment:
Q  60 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 144  Q
    ||||||||||  | ||||||||||||||| ||| |||||||||| ||||| || ||||||| |||||  ||||||||||| ||||    
T  11970968 atttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaat 11971052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 53430100 - 53430161
Alignment:
Q  75 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatat 136  Q
    ||||||||| |||||||| ||||||||||||||||  ||||| |||||||||  ||||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatat 53430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 11981664 - 11981753
Alignment:
Q  55 aatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 144  Q
    |||||||||||||||    |||||||||| |||| ||| ||||||| || ||||| || ||||||| |||||  ||||||||||| ||||    
T  11981664 aatcaatttgaagattaagataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaat 11981753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 3625825 - 3625670
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 152  Q
    |||||| | ||||||||  | |||||||||| |||| ||| |||||||||| ||||||||||||||||||||||  ||||||||||  | || | || ||    
T  3625825 ataatctaattgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggttacc 3625726  T
Q  153 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctat 208  Q
    ||||||  ||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  3625725 ttgtaagaataagaaaaacaaaggcagtcccccaacacaccaacatttggttctat 3625670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 24330900 - 24331027
Alignment:
Q  75 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 174  Q
    ||||||| | |||||| | ||||||||||||||||||||||||||| |||||  | ||||||||| |||||| ||||||||||   ||| ||||||||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaa 24330999  T
Q  175 gacagtcccccaacacaccaatagttgg 202  Q
    ||||| ||| ||| ||||||||||||||    
T  24331000 gacagcccctcaatacaccaatagttgg 24331027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 29597554 - 29597683
Alignment:
Q  76 aactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaag 175  Q
    |||||||| |||||||| |||||||||| | |||||| |||||||   |||  ||||||||||| ||||   |||||||| || | | ||||||||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaatggtgagaaaaacaaag 29597653  T
Q  176 acagtcccccaacacaccaatagttggttc 205  Q
     | ||||  ||| ||| |||||||||||||    
T  29597654 gcggtccagcaaaacagcaatagttggttc 29597683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 14514991 - 14514924
Alignment:
Q  53 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatt 120  Q
    |||||| ||||||||||   ||||||||||| |||||||| ||||||||||||||||||| |||||||    
T  14514991 ataatctatttgaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaatt 14514924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 6921349 - 6921420
Alignment:
Q  73 tataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 144  Q
    ||||||||||| |||||||| |||||||||| |||||||| ||||||| |||||  ||||| ||||| ||||    
T  6921349 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 6921420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 6935206 - 6935283
Alignment:
Q  62 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 139  Q
    |||||||| | ||||||||||| ||||||||  ||||||||| |||| ||| ||||||| |||||  ||||| |||||    
T  6935206 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataac 6935283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 20770734 - 20770650
Alignment:
Q  60 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 144  Q
    ||||||||||  | |||||||||| |||||||| || |||| || |||||||  ||||||| |||||  ||||||||||| ||||    
T  20770734 atttgaagattatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaat 20770650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University