View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_57 (Length: 418)
Name: NF10829A_low_57
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 5834994 - 5834629
Alignment:
| Q |
7 |
atataagtacagaagtttggtatagtggtaaaaatacaacatcaatttgaggtatcatattccaccaccataaatttatcgtataaaacacaatattaat |
106 |
Q |
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| T |
5834994 |
atataagtacaaaagtttggtatagtggtaaaaatacaacatcaaattgaggtatcatattccaccaccataaatttatcgtataaaacacaatattaat |
5834895 |
T |
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| Q |
107 |
ttgttagtttttcttctatggcaaatctctttcactagacatcaacattttaaacacgtcaagacttatgtgattatttatttaataaaaataaatgcta |
206 |
Q |
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| T |
5834894 |
ttgttagtttttcttctatggcaaatctctttcactagacatcaacattttaaacacgtcaagacttatgtgattatgtatttaataaaaataaatgct- |
5834796 |
T |
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| Q |
207 |
aatataatgagtttctccatcacgtacgttcacgtctttctttgtgtgctaaataaaaacattaattgcctaccatgcatacattctttggtgatacaac |
306 |
Q |
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| T |
5834795 |
aatataatgagtttctccatcacgtacgttcacgtctttctttgtgtgctaaataaaaacattaattgcctaccatacatacattctttggtgatacaac |
5834696 |
T |
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| Q |
307 |
aacaagcacttttgtacggatgattaaaacaagctagtatgccagtgccacaagaaatctagggttg |
373 |
Q |
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| T |
5834695 |
aacaagcacttttgtacggatgattaaaacaagctagtatgccagtgccacaagaaatctagggttg |
5834629 |
T |
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