View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_6 (Length: 655)
Name: NF10829A_low_6
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 22 - 653
Target Start/End: Complemental strand, 42862086 - 42861454
Alignment:
| Q |
22 |
gttagagacttgttgttttctttggttaagttcctcatgcttaccattcacatttgttcgatgctgtatcaattcttgaatacacccacaaacttcctgt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42862086 |
gttagagacttgttgttttctttggttaagttcctcatgcttaccattcacatttgttcgatgctgtatcaattcttgaatacacccacaaacttcctgt |
42861987 |
T |
|
| Q |
122 |
tgttcttgatgcacaccatgataattggatagagcaagtttgatgttctcaaa-cgaccaatagccatctgaactgcagaaaacgtcccaaaatcagcaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42861986 |
tgttcttgatgcacaccatgataattggatagagcaagtttgatgttctcaaaacgaccaatagccatctgaactgcagaaaacgtcccaaaatcggcaa |
42861887 |
T |
|
| Q |
221 |
aactgaggtgatctttgatttcatttaaatctttcaccaacgaagatatttcttcgacaactccagtgatggacatgattgagtcaagatccttgctcac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42861886 |
aactgaggtgatctttgatttcatttaaatctttcaccaacgaagatatttcttcgacaactccagtggtggacatgattgagtcaagatccttgctcac |
42861787 |
T |
|
| Q |
321 |
caaaggtttcagtttttgcataatttctgaaattttttgggcattcgagttttgagacagggcactagaggagcaggtagataccaacgaattcaagtga |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42861786 |
caaaggtttcagtttttgcataatttctgaaattttttgggcattcgagttttgagacagggcactagaggagcaggtagataccaacgaattcaagtga |
42861687 |
T |
|
| Q |
421 |
ctgtgggcagcgagttttgacacaaactcttctagttgatcagtcgaataaatgctcccactaacagtgtccatatcagaatccttgggagtttcagtag |
520 |
Q |
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| T |
42861686 |
ctgtgggcagcgagttttgacacaaactcttctagttgatcagtcgaataaatgctcccactaacagtgtccatatcagaatccttgggagtttcagtag |
42861587 |
T |
|
| Q |
521 |
ataattgtaacacctgcnnnnnnnngacacaatgaattgtcagttcctagtaaagaagggaaatagttataagctttctgnnnnnnnnnnnnnnnngaag |
620 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42861586 |
ataattgtaacacctgcaaaaaaaagacacaatgaattgtcagttcctagtaaagaagggaaatagttataagctttctgttttttttttttttttgaag |
42861487 |
T |
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| Q |
621 |
gaggaaagagttataagctttaatcaagttata |
653 |
Q |
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| T |
42861486 |
gaggaaagagttataagctttaatcaagttata |
42861454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 35 - 392
Target Start/End: Complemental strand, 27574858 - 27574488
Alignment:
| Q |
35 |
tgttttctttggttaagttcctcatgcttaccattcacatttgttcgatgctgtatcaattcttgaatacacccacaaacttcctgttgttcttgatgca |
134 |
Q |
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|||||||| ||||| |||||||| ||||| ||||||||| ||||||| | |||||||| ||||||| ||||||| |||| | |||||||||||||||| |
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| T |
27574858 |
tgttttctctggttgagttcctcgtgcttgtcattcacatctgttcgacgttgtatcaactcttgaagacacccaagaactccttgttgttcttgatgca |
27574759 |
T |
|
| Q |
135 |
caccatgataattggatagagcaagtttgatgttc------------tcaaa-cgaccaatagccatctgaactgcagaaaacgtcccaaaatcagcaaa |
221 |
Q |
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|| ||||||| ||||||| |||||||||||||| ||||| ||||||| | ||||||||||| ||||||| || ||||||||| || |
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| T |
27574758 |
catcatgataggtggatagggcaagtttgatgtttgggaagtcactttcaaaacgaccaacaaccatctgaactacagaaaaggttccaaaatcaacagg |
27574659 |
T |
|
| Q |
222 |
actgaggtgatctttgatttcatttaaatctttcaccaacgaagatatttcttcgacaactccagtgatggacatgattgagtcaagatccttgctcacc |
321 |
Q |
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| T |
27574658 |
gctgagatggtctttgatttcatctaaatttttcaacaatgaagatatctccccaacaacaccagtggtggacatgattgagtcaagatccttgcccacc |
27574559 |
T |
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| Q |
322 |
aaaggtttcagtttttgcataatttctgaaattttttgggcattcgagttttgagacagggcactagagga |
392 |
Q |
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|| ||||| ||||||||||| ||||||||| |||||| |||||| ||||||||| || ||||||||||| |
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| T |
27574558 |
aagactttcaatttttgcataacttctgaaatattttggacattcgggttttgagaaagagcactagagga |
27574488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 42857217 - 42857176
Alignment:
| Q |
550 |
caatgaattgtcagttcctagtaaagaagggaaatagttata |
591 |
Q |
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|||||||||| || |||||||||||||||||||||||||||| |
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| T |
42857217 |
caatgaattgacaattcctagtaaagaagggaaatagttata |
42857176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 594
Target Start/End: Complemental strand, 42855641 - 42855597
Alignment:
| Q |
550 |
caatgaattgtcagttcctagtaaagaagggaaatagttataagc |
594 |
Q |
| |
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| T |
42855641 |
caatgaattgacaattcctagtaaagaagggaaagagttataagc |
42855597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 594
Target Start/End: Complemental strand, 42848998 - 42848954
Alignment:
| Q |
550 |
caatgaattgtcagttcctagtaaagaagggaaatagttataagc |
594 |
Q |
| |
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|||||||||| || |||||||||||||||||||| | |||||||| |
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| T |
42848998 |
caatgaattgacaattcctagtaaagaagggaaagaattataagc |
42848954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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