View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_60 (Length: 412)
Name: NF10829A_low_60
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_60 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 32925186 - 32924803
Alignment:
| Q |
6 |
ataaaccgcttatggacatgtcataaattatttccatatgccctcaaacaatttcacaagttcttatacaagaagttaagcttgaataaatcatccaatc |
105 |
Q |
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| T |
32925186 |
ataaaccgcttatggacatgtcataaattatttccatatgctctcaaacaatttcacaagttcttatacaagaagttaaggttgaataaatcatccaatc |
32925087 |
T |
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| Q |
106 |
aaactcataatcatatatttatacctaatatgctgatgtgtgtgtcaccttaaaagaaaagttaaaaaatcagtgtaatctgagataatctcttctagac |
205 |
Q |
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| T |
32925086 |
aaactcataatcatatatttatacctaatatgctgatgtgt----caccttaaaagaaaagttaaaaaatcagtgtaatctgaaataatctcttctagac |
32924991 |
T |
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| Q |
206 |
ttgtacgcatgcagttaagaaaatgtttcataaaatgtaagagtgtgtactctattagcaatttcaaagtactgcctcttgtttgcctctgtctttgtga |
305 |
Q |
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| T |
32924990 |
ttgtacgca----gttaagaaaatgtttcataaaatgtaagagtgtgtactctattagcaatttcaaagtactgcctcttgtttgcctttgtatttgtga |
32924895 |
T |
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| Q |
306 |
aacaagctaaaacaataaaagtttgagcatattaagactataagagtaatcacatgaaaataaaggttcaaatgtaagatcagaaggattat |
397 |
Q |
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| T |
32924894 |
aacaagctaaaacaataaaagtttgagcatattaagactataagagtaatcacatgaaaataaaggttcaaatgtaagatcagaaggattat |
32924803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 379
Target Start/End: Complemental strand, 32919621 - 32919502
Alignment:
| Q |
259 |
attagcaatttcaaagtactgcctcttgtttgcctctgtctttgtgaaacaagctaaaacaataaaagtttgagcatattaagactataagagtaatcac |
358 |
Q |
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| T |
32919621 |
attagcaatttcaaagcactgccccttatttgcctttgtctttgtgaaacaaactgaaacaataaaagtttgaacacatcaagactgtaagagtatgcac |
32919522 |
T |
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| Q |
359 |
atgaaaataaaggttcaaatg |
379 |
Q |
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| T |
32919521 |
atgaaaat-aaggttcaaatg |
32919502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 51966 - 51937
Alignment:
| Q |
14 |
cttatggacatgtcataaattatttccata |
43 |
Q |
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| T |
51966 |
cttatggacatgtcataaattatttccata |
51937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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