View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_62 (Length: 410)

Name: NF10829A_low_62
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_62
NF10829A_low_62
[»] chr3 (3 HSPs)
chr3 (18-283)||(52374297-52374570)
chr3 (280-410)||(52374121-52374251)
chr3 (18-75)||(42453261-42453318)
[»] chr8 (4 HSPs)
chr8 (18-75)||(15167613-15167670)
chr8 (18-75)||(15078606-15078663)
chr8 (18-75)||(34048907-34048964)
chr8 (117-211)||(9107786-9107879)
[»] chr5 (7 HSPs)
chr5 (18-75)||(2411935-2411992)
chr5 (18-73)||(2024837-2024892)
chr5 (18-69)||(24395590-24395641)
chr5 (114-193)||(10543404-10543482)
chr5 (26-75)||(11242523-11242572)
chr5 (131-184)||(34221182-34221235)
chr5 (18-70)||(34307331-34307383)
[»] chr2 (10 HSPs)
chr2 (18-75)||(21665900-21665957)
chr2 (18-75)||(29694229-29694286)
chr2 (111-211)||(29694084-29694181)
chr2 (111-193)||(11952911-11952994)
chr2 (28-75)||(37622531-37622578)
chr2 (18-75)||(16227568-16227625)
chr2 (131-184)||(25192781-25192834)
chr2 (124-184)||(21190905-21190965)
chr2 (124-184)||(30175546-30175606)
chr2 (124-184)||(45156326-45156386)
[»] chr1 (5 HSPs)
chr1 (106-182)||(45758327-45758400)
chr1 (18-72)||(10926143-10926197)
chr1 (18-72)||(39134922-39134976)
chr1 (106-211)||(39135023-39135128)
chr1 (18-70)||(26803811-26803863)
[»] scaffold1320 (1 HSPs)
scaffold1320 (18-75)||(1202-1259)
[»] chr7 (7 HSPs)
chr7 (18-75)||(23858920-23858976)
chr7 (18-75)||(27237622-27237679)
chr7 (18-75)||(23020681-23020738)
chr7 (141-211)||(27237753-27237823)
chr7 (108-146)||(36891517-36891555)
chr7 (18-71)||(20153053-20153106)
chr7 (106-209)||(36903597-36903696)
[»] chr4 (7 HSPs)
chr4 (27-87)||(4168081-4168141)
chr4 (18-70)||(40217086-40217138)
chr4 (21-75)||(52468137-52468191)
chr4 (18-75)||(15734947-15735004)
chr4 (18-75)||(36118656-36118713)
chr4 (18-70)||(2135517-2135569)
chr4 (124-184)||(24404225-24404285)
[»] chr6 (3 HSPs)
chr6 (111-213)||(4036784-4036884)
chr6 (141-213)||(20611502-20611574)
chr6 (18-72)||(20611642-20611696)
[»] scaffold0007 (1 HSPs)
scaffold0007 (18-70)||(231059-231111)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 52374570 - 52374297
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg---------agaaggagaataaagaaaaaa--tattagtttg 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||| |||||| |||||||  ||||||||||    
T  52374570 atcaaattggggaagaagaaaaggaaagtctgataaagtgatggtgatggaacgcgtggtatcagaaagaaggcgaataaggaaaaaaaatattagtttg 52374471  T
Q  107 gtaatacttagtagtactactagactataaattatt--ttttgagacacataccttaaggaggcccaactccattgagcttcttgcacattccaagatcc 204  Q
    ||||||||||||||||||| ||     |||||||||  |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  52374470 gtaatacttagtagtactatta-----taaattattatttttgagacagatatcttagggaggcccaactccattgagcttcttgcacattccaagatcc 52374376  T
Q  205 ggccctgctaatttgtgagatgctaacttactacataataatgacttcaagtttaaaattaatttacattaacaattaa 283  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374375 gtccccgctaatttgtgagatgctaacttactacataataatgacttcaagtttaaaattaatttacattaacaattaa 52374297  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 280 - 410
Target Start/End: Complemental strand, 52374251 - 52374121
Alignment:
Q  280 ttaataatctctttaaatatattgtttgcttcatggatggcaaacaatagattagaaggtccaatagtattaacatttataatacacaagaaaaacataa 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52374251 ttaataatctctttaaatatattgtttgcttcatggatggcaaacaacagattagaaggtccaatattattaacatttataatacacaagaaaaacataa 52374152  T
Q  380 atacactgatagaatcaggcatcacactgtt 410  Q
    ||| |||||||||||||||||||||||||||    
T  52374151 atatactgatagaatcaggcatcacactgtt 52374121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 42453318 - 42453261
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  42453318 atcaaatcggggaagaagaaaaggaaagtctgatagagtgatggtgatggaacgcgtg 42453261  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 15167613 - 15167670
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  15167613 atcaaatcggagaagaagaaaaggaaagtctgatagagtgatggtgatggaacgcgtg 15167670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 15078663 - 15078606
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  15078663 atcaaatcggagaagaagaaaatgaaagtctgatagagtgatggtgatggaacgcgtg 15078606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34048907 - 34048964
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| ||||||||||||||||||||||  ||  ||||||||||||||||||||||    
T  34048907 atcaaatcggggaagaagaaaaggaaagtccgatggagtgatggtgatggaacgcgtg 34048964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 9107879 - 9107786
Alignment:
Q  117 gtagtactactagactataaattattttttgagacacataccttaaggaggcccaactccattgagcttcttgcacattccaagatccggccctg 211  Q
    ||||||||||| | ||||| || ||||||| || | ||||||||  ||||||||||||||||||||||  |||||| | | ||||||||||||||    
T  9107879 gtagtactactgggctatatat-atttttttaggcccataccttggggaggcccaactccattgagctgtttgcacctccaaagatccggccctg 9107786  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 2411992 - 2411935
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||| ||||    
T  2411992 atcaaattggggaagaagaaaaggaaagtctgatggagtgatggtgatggaacacgtg 2411935  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 2024837 - 2024892
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcg 73  Q
    ||||||| ||||||||||||||||||||||  ||  ||||||||||||||||||||    
T  2024837 atcaaatcggggaagaagaaaaggaaagtcagatggagtgatggtgatggaacgcg 2024892  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 24395641 - 24395590
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaa 69  Q
    ||||||| ||||||||||||||||||||||| ||  ||||||||||||||||    
T  24395641 atcaaatcggggaagaagaaaaggaaagtctgatggagtgatggtgatggaa 24395590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 10543482 - 10543404
Alignment:
Q  114 ttagtagtactactagactataaattattttttgagacacataccttaaggaggcccaactccattgagcttcttgcaca 193  Q
    |||||||||||||||| |||||| ||| |||||||  | |||||||| ||||||||| | || |||||||| ||||||||    
T  10543482 ttagtagtactactaggctataattta-tttttgaagctcataccttgaggaggcccgattctattgagctccttgcaca 10543404  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 11242523 - 11242572
Alignment:
Q  26 ggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    |||||||||||||||||||||| | |  ||||||| ||||||||||||||    
T  11242523 ggggaagaagaaaaggaaagtccattggagtgatgatgatggaacgcgtg 11242572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 34221182 - 34221235
Alignment:
Q  131 ctataaattattttttgagacacataccttaaggaggcccaactccattgagct 184  Q
    ||||||||| || | |||||||||||||||| ||||| ||| ||||||||||||    
T  34221182 ctataaatttttatatgagacacataccttagggaggtccagctccattgagct 34221235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 34307331 - 34307383
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaac 70  Q
    ||||||| || |||||||||||||||||||  ||  |||||||||||||||||    
T  34307331 atcaaatcggagaagaagaaaaggaaagtccgatggagtgatggtgatggaac 34307383  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 21665900 - 21665957
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  21665900 atcaaattggggaagaagaaaaggaaagtctgatggagtgatgatgatggaacgcgtg 21665957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29694286 - 29694229
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||    
T  29694286 atcaaatcggggaagaagaaaaggaaaatttgataaagtgatggtgatggaacgcgtg 29694229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 29694181 - 29694084
Alignment:
Q  111 tacttagtagtactactagactataaattattttttgagacacataccttaaggaggcccaactccattgagcttcttgcacattccaagatccggccct 210  Q
    ||||||||||||||| | | |||||| || ||||   |||| ||||||||||||||||||| ||||||||||||  |||||||  ||||| | |||||||    
T  29694181 tacttagtagtactagtgggctataatttttttt---agacccataccttaaggaggcccagctccattgagctctttgcacaccccaaggtgcggccct 29694085  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 11952911 - 11952994
Alignment:
Q  111 tacttagtagtactactagactataaattat-tttttgagacacataccttaaggaggcccaactccattgagcttcttgcaca 193  Q
    ||||||||||||||||  | ||||||||| | |||||||| | ||||||||  |||||||||  ||||||||||| ||||||||    
T  11952911 tacttagtagtactacagggctataaattttatttttgaggctcataccttggggaggcccagttccattgagctccttgcaca 11952994  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 37622531 - 37622578
Alignment:
Q  28 ggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  37622531 ggaagaagaaaaggaaagtctgatggagtgatgatgatggaacgcgtg 37622578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 16227568 - 16227625
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| |||||||||||||||||||| |  ||  ||||||||||||| ||||||||    
T  16227568 atcaaatcggggaagaagaaaaggaaaggccgatggagtgatggtgatgaaacgcgtg 16227625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 25192834 - 25192781
Alignment:
Q  131 ctataaattattttttgagacacataccttaaggaggcccaactccattgagct 184  Q
    ||||||||| |||| |||||| ||||||||| ||||||| | ||||||||||||    
T  25192834 ctataaatttttttatgagacccataccttagggaggcctagctccattgagct 25192781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 21190905 - 21190965
Alignment:
Q  124 tactagactataaattattttttgagacacataccttaaggaggcccaactccattgagct 184  Q
    |||||| ||||||||| |||| |||| | ||||||||  ||||||||| ||||||||||||    
T  21190905 tactaggctataaatttttttatgaggcccataccttggggaggcccagctccattgagct 21190965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 30175606 - 30175546
Alignment:
Q  124 tactagactataaattattttttgagacacataccttaaggaggcccaactccattgagct 184  Q
    |||||| ||||||||| |||| |||| | ||||||||  ||||||||| ||||||||||||    
T  30175606 tactaggctataaatttttttatgaggcccataccttggggaggcccagctccattgagct 30175546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 45156326 - 45156386
Alignment:
Q  124 tactagactataaattattttttgagacacataccttaaggaggcccaactccattgagct 184  Q
    |||||| ||||||||| |||| |||| | ||||||||  ||||||||| ||||||||||||    
T  45156326 tactaggctataaatttttttatgaggcccataccttggggaggcccagctccattgagct 45156386  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 45758400 - 45758327
Alignment:
Q  106 ggtaatacttagtagtactactagactataaattattttttgagacacataccttaaggaggcccaactccattgag 182  Q
    |||| ||||||||||||||||| |||||||| ||   ||||||||| ||||||||||||||| ||| ||||||||||    
T  45758400 ggtagtacttagtagtactactggactataattt---ttttgagacccataccttaaggaggtccatctccattgag 45758327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 10926143 - 10926197
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgc 72  Q
    ||||||| || |||||||||||||||||||| ||  |||||||||||||||||||    
T  10926143 atcaaatcggagaagaagaaaaggaaagtctgatggagtgatggtgatggaacgc 10926197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 39134922 - 39134976
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgc 72  Q
    ||||||| ||||||||||||||||||| ||| ||  |||||||||||||||||||    
T  39134922 atcaaatcggggaagaagaaaaggaaaatctgatggagtgatggtgatggaacgc 39134976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 39135023 - 39135128
Alignment:
Q  106 ggtaatacttagtagtactactagactataaattattttttgagacacataccttaaggaggcccaactccattgagcttcttgcacattccaagatccg 205  Q
    |||| ||||||||||||||||| | |||||| ||  |||||||| | ||||||||  |||||||||  |||||||||||  |||||||  ||||| | ||    
T  39135023 ggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcg 39135122  T
Q  206 gccctg 211  Q
    ||||||    
T  39135123 gccctg 39135128  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 26803863 - 26803811
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaac 70  Q
    ||||||| ||| ||||||||||| ||||||| ||  |||||||||||||||||    
T  26803863 atcaaatcgggaaagaagaaaagaaaagtctgatggagtgatggtgatggaac 26803811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 1259 - 1202
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  1259 atcaaatcggagaagaagaaaatgaaagtctgatagagtgatggtgatggaacgcgtg 1202  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 23858976 - 23858920
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    |||||||||||||||||||||||| |||||| ||  ||||||||||||||||||||||    
T  23858976 atcaaattggggaagaagaaaagg-aagtctgatgcagtgatggtgatggaacgcgtg 23858920  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 27237622 - 27237679
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| ||||||||||||||||||||||  ||  ||||||||||||||||||||||    
T  27237622 atcaaatcggggaagaagaaaaggaaagtccgatggagtgatggtgatggaacgcgtg 27237679  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 23020681 - 23020738
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| ||||||||||||||||||||||  ||  | ||||||||||||||||||||    
T  23020681 atcaaatcggggaagaagaaaaggaaagtccgatggaatgatggtgatggaacgcgtg 23020738  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 27237753 - 27237823
Alignment:
Q  141 ttttttgagacacataccttaaggaggcccaactccattgagcttcttgcacattccaagatccggccctg 211  Q
    |||||| |||| ||||||| | ||||||||||||||||||||||  |||||||  ||||  ||||||||||    
T  27237753 tttttttagacccatacctcagggaggcccaactccattgagctctttgcacaccccaaagtccggccctg 27237823  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 36891555 - 36891517
Alignment:
Q  108 taatacttagtagtactactagactataaattatttttt 146  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  36891555 taatacttagtagtactactagactataatttttttttt 36891517  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 20153106 - 20153053
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacg 71  Q
    ||||||| ||||||||||||||  |||||| |||  ||||||||||||||||||    
T  20153106 atcaaatcggggaagaagaaaaacaaagtccaatggagtgatggtgatggaacg 20153053  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 36903597 - 36903696
Alignment:
Q  106 ggtaatacttagtagtactactagactataaattattttttgagacacataccttaaggaggcccaactccattgagcttcttgcacattccaagatccg 205  Q
    |||| ||||||||||||||||| |||||||| ||||||||  ||||  |||||||   |||||||| ||| ||||||||  ||||||   ||||||||||    
T  36903597 ggtagtacttagtagtactactggactataatttattttt--agacttataccttggagaggcccagctcaattgagctctttgcac--cccaagatccg 36903692  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 4168081 - 4168141
Alignment:
Q  27 gggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtgagaaggagaata 87  Q
    ||||||||||||||| |||||  ||  |||||||||||||||||||||||||| |||||||    
T  4168081 gggaagaagaaaagggaagtcagatggagtgatggtgatggaacgcgtgagaaagagaata 4168141  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 40217138 - 40217086
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaac 70  Q
    ||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  40217138 atcaaatcggggaagaagaaaaggaaagtctgatggagtgatggtgatggaac 40217086  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 52468191 - 52468137
Alignment:
Q  21 aaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    |||| ||||||||| ||||||||||||| ||  ||||||||||||||||||||||    
T  52468191 aaatcggggaagaaaaaaaggaaagtctgatggagtgatggtgatggaacgcgtg 52468137  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 15735004 - 15734947
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| || ||||||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  15735004 atcaaatcggagaagaagaaaacgaatgtccaatgaagtgatagtgatggaacgcgtg 15734947  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 36118656 - 36118713
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgcgtg 75  Q
    ||||||| ||||||||||||||||||||||  ||  ||||||||| |||||| |||||    
T  36118656 atcaaatcggggaagaagaaaaggaaagtccgatggagtgatggtaatggaaagcgtg 36118713  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 2135517 - 2135569
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaac 70  Q
    ||||||| ||||||||||||||||||||||| ||  ||||||| |||| ||||    
T  2135517 atcaaatcggggaagaagaaaaggaaagtctgatggagtgatgatgattgaac 2135569  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 24404285 - 24404225
Alignment:
Q  124 tactagactataaattattttttgagacacataccttaaggaggcccaactccattgagct 184  Q
    |||||| ||||||||| |||| |||| | ||||||||  ||||||||| ||||||||||||    
T  24404285 tactaggctataaatttttttatgaggcccataccttggggaggcccagctccattgagct 24404225  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 4036884 - 4036784
Alignment:
Q  111 tacttagtagtactactagactataaattattttttgagacacataccttaaggaggcccaactccattgagcttcttgcacattccaagatccggccct 210  Q
    ||||||||||||||||| | |||||| ||  |||||||| | ||||| ||  ||||||||||||||||||||| | |||||||  ||||| |||| ||||    
T  4036884 tacttagtagtactactgggctataattt--tttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaaggtccgaccct 4036787  T
Q  211 gct 213  Q
    |||    
T  4036786 gct 4036784  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 20611574 - 20611502
Alignment:
Q  141 ttttttgagacacataccttaaggaggcccaactccattgagcttcttgcacattccaagatccggccctgct 213  Q
    |||||| |||| ||||||||| ||||||||| ||||||||||||  |||||||  ||||| |||| |||||||    
T  20611574 tttttttagacccataccttagggaggcccagctccattgagctctttgcacaccccaaggtccgaccctgct 20611502  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 20611696 - 20611642
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaacgc 72  Q
    ||||||| ||||||||||||||||||||||| ||  ||  |||||||||||||||    
T  20611696 atcaaatcggggaagaagaaaaggaaagtctgatggagcaatggtgatggaacgc 20611642  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 231059 - 231111
Alignment:
Q  18 atcaaattggggaagaagaaaaggaaagtctaataaagtgatggtgatggaac 70  Q
    |||||||  |||||||||||||||||||||| ||  ||||||| |||||||||    
T  231059 atcaaatcagggaagaagaaaaggaaagtctgatggagtgatgttgatggaac 231111  T

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