View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_79 (Length: 384)
Name: NF10829A_low_79
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_79 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 384
Target Start/End: Original strand, 4968753 - 4969141
Alignment:
| Q |
9 |
agcaaagagatgattgagagagagaaa-gaaatatatatcattctgacggtgtaacataacatcattcatccgacgattcaaataacttgtccatcgtga |
107 |
Q |
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| T |
4968753 |
agcaaagagatgattgagagagagaaaagaaatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccatcgtga |
4968852 |
T |
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| Q |
108 |
gagacttgcttcacttgcccaccctagcatccgcgccaagttcactttgttttgaaacataacttctttc----------aattctttgtaatttcaatt |
197 |
Q |
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| T |
4968853 |
gagacttgcttcacttgcccaccctagcatcggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaatttcaatt |
4968952 |
T |
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| Q |
198 |
cctcatgtttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacataccatcacacacataaggtttttcagatta |
297 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4968953 |
cctcatatttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacataaggtttttcagatta |
4969052 |
T |
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| Q |
298 |
tc--ataacttgtcttgtctaagattcaatattcgtaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaat |
384 |
Q |
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| T |
4969053 |
tcagataacttgtcttgtctaagattcaatattcacaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaat |
4969141 |
T |
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