View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_80 (Length: 381)
Name: NF10829A_low_80
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 3879430 - 3879795
Alignment:
| Q |
1 |
atcgcaagatgtaggcacacaggtccagcagcaagtctacaaggtatcttctagttccccaacatataacaatgagaatggcaaactcagtttttggcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879430 |
atcgcaagatgtaggcacacaggtccagcagcaagtctacaaggtatcctctagttcaccaacatataacaatgagaatggcaaactcagtttttggcat |
3879529 |
T |
|
| Q |
101 |
gacagatttatttaatgtcattataaattttcaggatagtggagttggtatgcatgtggggtctcccatgcctagaaaccctctggatgcaagacaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3879530 |
gacagatttatttaatgtcattataaattttcaggatagtggagttggtatgcatgtggggtctcccatgcctagaaaccctctcgatgcaagacaaaaa |
3879629 |
T |
|
| Q |
201 |
gcaatgctgcctttagatggaccgcatgtaacaagtatgtcttgaacctattctccatattccccatttgatataaataataaaattcacattcaatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879630 |
gcaatgctgcctttagatggaccgcatgtaacaagtatgtcttgaacctattctccatattccccatttgatataaataataaaattcacattcaatttt |
3879729 |
T |
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| Q |
301 |
aatgaaaagatttttattccgtagctgattaatgcgtgaaatattatatttcgagatcttaatgat |
366 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879730 |
aatgaaaagatttttattccttagctgattaatgcgtgaaatattatatttcgagatcttaatgat |
3879795 |
T |
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