View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_83 (Length: 380)
Name: NF10829A_low_83
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 35742596 - 35742959
Alignment:
| Q |
13 |
aatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttca |
112 |
Q |
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| T |
35742596 |
aatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacaaaatcggaatccacttatcgaggtgttca |
35742695 |
T |
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| Q |
113 |
attgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattttataagtta |
212 |
Q |
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| T |
35742696 |
attgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattctataagtta |
35742795 |
T |
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| Q |
213 |
ctggatcttcgagatattcgagatcctcgtactcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttatacctccactgtttaga |
312 |
Q |
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| T |
35742796 |
ctggatcttcgagatcttcgagatcctcgtactcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttatacctccactgtttaga |
35742895 |
T |
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| Q |
313 |
caaaatactagtcacaactagatctttgatgtccaagtgtgacagcatgccgacaatgccattg |
376 |
Q |
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| T |
35742896 |
caaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattg |
35742959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 35748963 - 35749294
Alignment:
| Q |
15 |
tatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaat |
114 |
Q |
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| T |
35748963 |
tatatggcatttgatcgacatgtgttccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactgaggaattcaat |
35749062 |
T |
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| Q |
115 |
tgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattttataagttact |
214 |
Q |
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| T |
35749063 |
tatgatcttgaaattgtagtcataaggtatgaaaagatgaaacttatgtatcggaccgttgtgttgcataagaacatctgtgatgattttagaagctaca |
35749162 |
T |
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| Q |
215 |
ggatcttcgagatattcgagatcctcgtactcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttatacctccactgtttagaca |
314 |
Q |
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|| | | || |||||||||| |||||| |||||| |||| |||| |||||||||| |||||||| ||| ||| |||||||||| | ||| |||| |
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| T |
35749163 |
gg---gccagggtaatcgagatccttgtactcgtcaaaatagtcttcaccaaaccaaagttgtggggctgaagttcacatatacctccaattttttgaca |
35749259 |
T |
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| Q |
315 |
aaatactagtcacaactagatctttgatgtccaag |
349 |
Q |
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| T |
35749260 |
aaatactagtcctaactaggtctttgatgtacaag |
35749294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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