View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_86 (Length: 376)
Name: NF10829A_low_86
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 167 - 366
Target Start/End: Original strand, 12974243 - 12974443
Alignment:
| Q |
167 |
tcctctttaataacacttagaatttaaaataaccataatcatatcgatccttctgannnnnnngttgttgttacattgatcctcatttcatcaaattttt |
266 |
Q |
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| T |
12974243 |
tcctctttaataacacttagaatttaaaataaccataatcatatcgatccttctgatttttttgttgttgttacattgatcctcatttcatcaaattttt |
12974342 |
T |
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| Q |
267 |
atgcaagttaatctttttatcggtttttctattagttgcattatcatgcatgtcatggcacctttaattgac-gaagatattgtgcacatgatgtccatc |
365 |
Q |
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| T |
12974343 |
atgcaagttaatctttttatcggtttttctattagttgcattatcatgcatgtcatggcacctttaattgacggaagatattgtgcacatgaagtccatc |
12974442 |
T |
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| Q |
366 |
t |
366 |
Q |
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| T |
12974443 |
t |
12974443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 13148141 - 13148247
Alignment:
| Q |
7 |
ataaatgcccattgaaatggcaaggaaatggggtcaaacaatatacctatcttgaagtgtggaaaagtcttggagatataagaatcatatggctcatcaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
13148141 |
ataaatgcccattgaaatggcaaggaaatggggtcaaacaatat--------tgaagtgtggaaaagtcttggagatataagaatcatgtggctcaccaa |
13148232 |
T |
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| Q |
107 |
ttttttagcaagatt |
121 |
Q |
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| T |
13148233 |
ttttttagcaagatt |
13148247 |
T |
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