View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_87 (Length: 375)
Name: NF10829A_low_87
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 369
Target Start/End: Complemental strand, 29158382 - 29158028
Alignment:
| Q |
15 |
atgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29158382 |
atgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttca |
29158283 |
T |
|
| Q |
115 |
tcactcaactgctttccaatggtgaagctaataccaaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgtca |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29158282 |
tcactcaactgctctccaatggtgaagctaataccaaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgtca |
29158183 |
T |
|
| Q |
215 |
gtgtactgatgttagagaaaaatgtcactcagcttgcaaaagttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcactaacttc |
314 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29158182 |
gtgtactgatgttaaagaaaaatgtcactcagcttgcaaaagttgcctttgcacacggtcttttcctccacagtgtcgttgctatgatatcactaacttc |
29158083 |
T |
|
| Q |
315 |
tgctatccatcatgtagttaattaactatgtaattaaccatgcatgtgatgtgag |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29158082 |
tgctatccatcatgtagttaattaactatgtaattaaccatgcatgtgatgtgag |
29158028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 29206988 - 29206677
Alignment:
| Q |
15 |
atgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttca |
114 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||| | ||||||||| |
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| T |
29206988 |
atgaacaagaaggcaatggtgatgaagttagctttgttggttttccttttgggcttcacttcaactgttgttgatgctcgtttcgacggatcatccttca |
29206889 |
T |
|
| Q |
115 |
tcactcaactgctttccaatggtgaagctaatacc------aaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctca |
208 |
Q |
| |
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||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||| || |||||||||||||| |||||| || ||||| |
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| T |
29206888 |
tcactcaactgctctccaatggtgaagctacttacgaagtaaaatccacaacaacagcatgctgtaatagctgcccttgcacaaaatcaattcctcctca |
29206789 |
T |
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| Q |
209 |
atgtcagtgtactgatgttagagaaaaatgtcactcagcttgcaaaagttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcact |
308 |
Q |
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||||| ||| ||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||| |||| |
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| T |
29206788 |
gtgtcactgtgctgatattggagaaaaatgtcactcagcttgcaaaagatgcctttgcacaagatcttttcctccacagtgccgttgcactgataccact |
29206689 |
T |
|
| Q |
309 |
aacttctgctat |
320 |
Q |
| |
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| ||||||||| |
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| T |
29206688 |
gatttctgctat |
29206677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 156 - 323
Target Start/End: Complemental strand, 29145110 - 29144943
Alignment:
| Q |
156 |
acaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgtcagtgtactgatgttagagaaaaatgtcactcagcttgcaaaa |
255 |
Q |
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|
|||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || ||||||||| || |||||| |||||||||||||||||||| |
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| T |
29145110 |
acaacaacagcatgctgtgattcctgcccttgcacaaaatcaatccctcctcaatgccattgtactgatattggagaaacatgtcactcagcttgcaaaa |
29145011 |
T |
|
| Q |
256 |
gttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcactaacttctgctatcca |
323 |
Q |
| |
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| || |||||||||| ||| ||||||||||||||| ||| |||||||||| |||||||||||||| |
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| T |
29145010 |
gctgtctttgcacaaaatctattcctccacagtgtcactgcgctgatatcactgacttctgctatcca |
29144943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 368
Target Start/End: Complemental strand, 29162036 - 29161697
Alignment:
| Q |
32 |
gatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttcatcactcaactgctttcc |
131 |
Q |
| |
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|||||||||||||||||| |||||||| || ||| ||||||||||||| | ||||||||||||||||||| |||||||||| |||||| | | || |
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| T |
29162036 |
gatgatgaagttagctttattggtttttcttttgggcttcacttcaactgttgttgatgctcgtttcgatccaacatccttcataactcaagtaatctca |
29161937 |
T |
|
| Q |
132 |
aatggtgaagct------aataccaaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgt-cagtgtactgat |
224 |
Q |
| |
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|||||||||||| || ||||||||||||||||| ||||||| || ||||| |||||||||||| |||||| |||| |||||||||| |
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| T |
29161936 |
aatggtgaagctgcttacgatgtcaaatccacaacaacaggatgctgtaatagctgccaatgcacaagatcattcccacaagcatgtgtggtgtactgat |
29161837 |
T |
|
| Q |
225 |
gttagagaaaaatgtcact---cagcttgcaaaagttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcactaacttctgctatc |
321 |
Q |
| |
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||||||||||||||| ||| ||| |||| | |||| ||||||||| || | ||||||||||||| |||||| ||||| |||||| ||||||||||| |
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| T |
29161836 |
gttagagaaaaatgtaactcaccaggttgcttagattgcgtttgcacaaagtttattcctccacagtgccgttgccatgatgtcactaccttctgctatc |
29161737 |
T |
|
| Q |
322 |
catcatgtagttaattaactatgtaattaaccatgcatgtgatgtga |
368 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| |
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| T |
29161736 |
---aatgtgattaattaactatg----taaccatgcatgtgatgtga |
29161697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 29153753 - 29153631
Alignment:
| Q |
17 |
gaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttcatc |
116 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||| | |||||||||||||||||| |||||||||| |
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| T |
29153753 |
gaacaagaaggcaatggtgatgaagttagctttgctggttttccttttgggcttcacttcaactgttgttgatgctcgtttcgattcaacatccttcata |
29153654 |
T |
|
| Q |
117 |
actcaactgctttccaatggtga |
139 |
Q |
| |
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|||||| || | || |||||||| |
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| T |
29153653 |
actcaagtgatctcaaatggtga |
29153631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 29145170 - 29145111
Alignment:
| Q |
33 |
atgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgct |
92 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29145170 |
atgatgaaattagctttgttggttttcctcttgagcttcacatcaaccatggttgatgct |
29145111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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