View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_89 (Length: 373)
Name: NF10829A_low_89
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 37741889 - 37741544
Alignment:
| Q |
11 |
tgaggagggcaccatctacaagttggtgacaattttcttaattaa-gtaatgattttggcacgcgattaaaaattcaatacctaacagtggatctaggtc |
109 |
Q |
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| T |
37741889 |
tgaggagggcaccatctacaagttggtgacaattttcttaattaaagtaatgattttggcacgcaattaaaaattcaatacctaacagtgaatctaggtc |
37741790 |
T |
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| Q |
110 |
tcagatattccaccttaactaatgttacatatatatcattcaacnnnnnnnn-ggtttagttcagaaatgtacattgtatagtttctgtgtgcattttga |
208 |
Q |
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| T |
37741789 |
tcagatattccaccttaattaatgttacatatatatcattcaactttttttttggtttagttcagaaatgtacattgtatagtttctgtgtgcattttga |
37741690 |
T |
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| Q |
209 |
atattaggaagagggatataaacatgattatgaaaaatagacaggaccaaccgattcaatccaaagttgatcacggttaaatcattgaactttcaattaa |
308 |
Q |
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| T |
37741689 |
atattaggaagagggatataaacatgattatgaaaaatagacaggaccaaccgattcaatccaaagttgatcacggttaaatcattgaactttcaattaa |
37741590 |
T |
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| Q |
309 |
agtatcatcaccggtttgatgttatgtgatgaaatcttgttgttac |
354 |
Q |
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| T |
37741589 |
agtatcatcactggtttgatgttatgtgatgaaatcttgtcgttac |
37741544 |
T |
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